YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47096609, gi\|...
Organism:	Listeria monocytogenes serotype 1/2a str. F6854
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47096609, gi|....

Description	E-value	Query Range	Subject Range
gi\|153202958, gi... - gi\|254931862\|ref\|ZP_05265221.1\| hypothetical protein LmonH_05512 [Listeria monocytogenes HPB2262], g... gi\|46881469, gi\|... - gi\|46908199\|ref\|YP_014588.1\| MutT/nudix family protein [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|47093295, gi\|... - gi\|47093295\|ref\|ZP_00231065.1\| MutT/nudix family protein [Listeria monocytogenes str. 4b H7858], gi\|... gi\|254825538 - gi\|254825538\|ref\|ZP_05230539.1\| hypothetical protein LmonFS_10249 [Listeria monocytogenes FSL J1-194... gi\|226224570, gi... - gi\|226224570\|ref\|YP_002758677.1\| hypothetical protein Lm4b_01984 [Listeria monocytogenes Clip81459],... gi\|255522141 - gi\|255522141\|ref\|ZP_05389378.1\| hypothetical protein LmonocFSL_13145 [Listeria monocytogenes FSL J1-... gi\|254852868 - gi\|254852868\|ref\|ZP_05242216.1\| hypothetical protein LmonoFSL_06071 [Listeria monocytogenes FSL R2-5...	169.0	[0..1]	[185..1]
gi\|16801145 - gi\|16801145\|ref\|NP_471413.1\| hypothetical protein lin2079 [Listeria innocua Clip11262] gi\|25303390, gi\|... - pir\|\|AE1692 hypothetical protein homolog lin2079 [imported] - Listeria innocua (strain Clip11262), g...	168.0	[0..1]	[185..1]
gi\|74489537, gi\|... - gi\|75762975\|ref\|ZP_00742773.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar israelensi... gi\|218899257, gi... - gi\|218899257\|ref\|YP_002447668.1\| mutT/nudix family protein [Bacillus cereus G9842], gi\|218541079\|gb\|... gi\|228902606, gi... - gi\|228902606\|ref\|ZP_04066757.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis IBL 4222], gi\|228... gi\|228849761, gi... - gi\|228909926\|ref\|ZP_04073747.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis IBL 200], gi\|2288...	161.0	[0..1]	[179..1]
gi\|254758189 - gi\|254758189\|ref\|ZP_05210216.1\| mutT/nudix family protein [Bacillus anthracis str. Australia 94] gi\|254754121 - gi\|254754121\|ref\|ZP_05206156.1\| mutT/nudix family protein [Bacillus anthracis str. Vollum] gi\|254744099 - gi\|254744099\|ref\|ZP_05201782.1\| mutT/nudix family protein [Bacillus anthracis str. Kruger B] gi\|254736210 - gi\|254736210\|ref\|ZP_05193916.1\| mutT/nudix family protein [Bacillus anthracis str. Western North Ame... gi\|254721698 - gi\|254721698\|ref\|ZP_05183487.1\| mutT/nudix family protein [Bacillus anthracis str. A1055] gi\|254683863 - gi\|254683863\|ref\|ZP_05147723.1\| mutT/nudix family protein [Bacillus anthracis str. CNEVA-9066] gi\|229264408, gi... - gi\|229600000\|ref\|YP_002868395.1\| MutT/NUDIX family protein [Bacillus anthracis str. A0248], gi\|22926... gi\|118418522, gi... - gi\|118479297\|ref\|YP_896448.1\| ADP-ribose diphosphatase [Bacillus thuringiensis str. Al Hakam], gi\|11... gi\|229198219, gi... - gi\|229198219\|ref\|ZP_04324927.1\| ADP-ribose pyrophosphatase [Bacillus cereus m1293], gi\|228585238\|gb\|... gi\|229186341, gi... - gi\|229186341\|ref\|ZP_04313506.1\| ADP-ribose pyrophosphatase [Bacillus cereus BGSC 6E1], gi\|228597135\|... gi\|228642621, gi... - gi\|229140831\|ref\|ZP_04269376.1\| ADP-ribose pyrophosphatase [Bacillus cereus BDRD-ST26], gi\|228642621... gi\|229093157, gi... - gi\|229093157\|ref\|ZP_04224275.1\| ADP-ribose pyrophosphatase [Bacillus cereus Rock3-42], gi\|228690131\|... gi\|228947815, gi... - gi\|228947815\|ref\|ZP_04110102.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar monterrey... gi\|228935417, gi... - gi\|228935417\|ref\|ZP_04098235.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar andalousi... gi\|228830435, gi... - gi\|228929145\|ref\|ZP_04092172.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar pondicher... gi\|228842922, gi... - gi\|228916735\|ref\|ZP_04080300.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar pulsiensi... gi\|227816873, gi... - gi\|227816873\|ref\|YP_002816882.1\| mutT/nudix family protein [Bacillus anthracis str. CDC 684], gi\|227... gi\|225866080, gi... - gi\|225866080\|ref\|YP_002751458.1\| mutT/nudix family protein [Bacillus cereus 03BB102], gi\|225790260\|g... gi\|167639567, gi... - gi\|167639567\|ref\|ZP_02397838.1\| mutT/nudix family protein [Bacillus anthracis str. A0193], gi\|167512... gi\|170687194, gi... - gi\|170687194\|ref\|ZP_02878412.1\| mutT/nudix family protein [Bacillus anthracis str. A0465], gi\|170668... gi\|170705903, gi... - gi\|170705903\|ref\|ZP_02896366.1\| mutT/nudix family protein [Bacillus anthracis str. A0389], gi\|170129... gi\|177652580, gi... - gi\|177652580\|ref\|ZP_02934996.1\| mutT/nudix family protein [Bacillus anthracis str. A0174], gi\|172081... gi\|190565872, gi... - gi\|190565872\|ref\|ZP_03018791.1\| mutT/nudix family protein [Bacillus anthracis Tsiankovskii-I], gi\|19... gi\|196034916, gi... - gi\|196034916\|ref\|ZP_03102323.1\| mutT/nudix family protein [Bacillus cereus W], gi\|195992455\|gb\|EDX56... gi\|196021938, gi... - gi\|196047189\|ref\|ZP_03114405.1\| mutT/nudix family protein [Bacillus cereus 03BB108], gi\|196021938\|gb... gi\|206745553, gi... - gi\|206976357\|ref\|ZP_03237265.1\| mutT/nudix family protein [Bacillus cereus H3081.97], gi\|206745553\|g... gi\|165871106, gi... - gi\|165871106\|ref\|ZP_02215756.1\| mutT/nudix family protein [Bacillus anthracis str. A0488], gi\|164713... gi\|167633750, gi... - gi\|167633750\|ref\|ZP_02392074.1\| mutT/nudix family protein [Bacillus anthracis str. A0442], gi\|167531... gi\|217961588, gi... - gi\|217961588\|ref\|YP_002340158.1\| mutT/nudix family protein [Bacillus cereus AH187], gi\|217064778\|gb\|... gi\|218905234, gi... - gi\|218905234\|ref\|YP_002453068.1\| mutT/nudix family protein [Bacillus cereus AH820], gi\|218540174\|gb\|... gi\|49331885, gi\|... - gi\|49480329\|ref\|YP_038156.1\| ADP-ribose diphosphatase [Bacillus thuringiensis serovar konkukian str.... gi\|221241603, gi... - gi\|222097545\|ref\|YP_002531602.1\| ADP-ribose diphosphatase [Bacillus cereus Q1], gi\|221241603\|gb\|ACM1... gi\|51974868, gi\|... - gi\|52141399\|ref\|YP_085431.1\| ADP-ribose diphosphatase [Bacillus cereus E33L], gi\|51974868\|gb\|AAU1641... gi\|47529613, gi\|... - gi\|47529613\|ref\|YP_020962.1\| mutT/nudix family protein [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|49187002, gi\|... - gi\|49187002\|ref\|YP_030254.1\| mutT/nudix family protein [Bacillus anthracis str. Sterne], gi\|49180929... gi\|21402149, gi\|... - gi\|65321488\|ref\|ZP_00394447.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|30264172, gi\|... - gi\|30264172\|ref\|NP_846549.1\| mutT/nudix family protein [Bacillus anthracis str. Ames], gi\|30258817\|g...	160.0	[0..1]	[179..1]
gi\|228614687, gi... - gi\|229168839\|ref\|ZP_04296558.1\| ADP-ribose pyrophosphatase [Bacillus cereus AH621], gi\|228614687\|gb\|... gi\|228648579, gi... - gi\|229134904\|ref\|ZP_04263711.1\| ADP-ribose pyrophosphatase [Bacillus cereus BDRD-ST196], gi\|22864857... gi\|89207370, gi\|... - gi\|89207370\|ref\|ZP_01185913.1\| NUDIX hydrolase [Bacillus weihenstephanensis KBAB4], gi\|89154728\|gb\|E...	160.0	[0..1]	[179..1]
gi\|47568152, gi\|... - gi\|47568152\|ref\|ZP_00238856.1\| MutT/nudix family protein [Bacillus cereus G9241], gi\|47555142\|gb\|EAL... gi\|228987288, gi... - gi\|228987288\|ref\|ZP_04147409.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar tochigien... gi\|228625637, gi... - gi\|229157680\|ref\|ZP_04285755.1\| ADP-ribose pyrophosphatase [Bacillus cereus ATCC 4342], gi\|228625637...	160.0	[0..1]	[179..1]
gi\|251810916, gi... - gi\|251810916\|ref\|ZP_04825389.1\| ADP-ribose diphosphatase [Staphylococcus epidermidis BCM-HMP0060], g... gi\|57866974, gi\|... - gi\|57866974\|ref\|YP_188639.1\| MutT/nudix family protein [Staphylococcus epidermidis RP62A], gi\|576376... gi\|27468101, gi\|... - gi\|27468101\|ref\|NP_764738.1\| ADP-ribose pyrophosphatase [Staphylococcus epidermidis ATCC 12228], gi\|...	160.0	[0..3]	[179..2]
gi\|228974180, gi... - gi\|228974180\|ref\|ZP_04134750.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar thuringie... gi\|228799385, gi... - gi\|228960361\|ref\|ZP_04122014.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar pakistani... gi\|228818407, gi... - gi\|228941248\|ref\|ZP_04103801.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis serovar berliner ... gi\|229129375, gi... - gi\|229129375\|ref\|ZP_04258346.1\| ADP-ribose pyrophosphatase [Bacillus cereus BDRD-Cer4], gi\|228653980... gi\|229111570, gi... - gi\|229111570\|ref\|ZP_04241121.1\| ADP-ribose pyrophosphatase [Bacillus cereus Rock1-15], gi\|228671952\|... gi\|229047789, gi... - gi\|229047789\|ref\|ZP_04193369.1\| ADP-ribose pyrophosphatase [Bacillus cereus AH676], gi\|228723581\|gb\|... gi\|228980771, gi... - gi\|228980771\|ref\|ZP_04141076.1\| ADP-ribose pyrophosphatase [Bacillus thuringiensis Bt407], gi\|228778... gi\|30022181, gi\|... - gi\|30022181\|ref\|NP_833812.1\| ADP-ribose pyrophosphatase [Bacillus cereus ATCC 14579], gi\|29897738\|gb... gi\|229152297, gi... - gi\|229152297\|ref\|ZP_04280490.1\| ADP-ribose pyrophosphatase [Bacillus cereus m1550], gi\|228631259\|gb\|... gi\|229146671, gi... - gi\|229146671\|ref\|ZP_04275038.1\| ADP-ribose pyrophosphatase [Bacillus cereus BDRD-ST24], gi\|228636841...	160.0	[0..1]	[179..1]
gi\|68196163, gi\|... - gi\|69244809\|ref\|ZP_00603033.1\| NUDIX hydrolase [Enterococcus faecium DO], gi\|68196163\|gb\|EAN10593.1\|... gi\|48826039 - ref\|ZP_00287267.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Ent...	159.0	[0..3]	[185..23]
gi\|89099041, gi\|... - gi\|89099041\|ref\|ZP_01171920.1\| hypothetical protein B14911_08577 [Bacillus sp. NRRL B-14911], gi\|890...	159.0	[0..1]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLEEKTLH TEQIFSGNII ELQVDDVELP NGEKSKREIV KHPGAVAIIP FSEDGGMYLV  60
   61 EQYRKPLEKT IIEIPAGKME PGEDPLVTAR RELEEETGFQ SDDLTYLTSF YTSPGFANEL 120
  121 LHIYVARDLR KMEQPLAQDA DEFINLVKVT PEEAEQLIEQ QFIHDAKTMY AMQYWKLQLL 180
  181 IEENE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1mk1A
Description:	Structure of the MT-ADPRase in complex with ADPR, a Nudix enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.914814648797509	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.60834739024706	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.608343780811364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: