YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16803445
Organism:	Listeria monocytogenes EGD-e
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16803445.

Description	E-value	Query Range	Subject Range
gi\|47095356, gi\|... - gi\|47095356\|ref\|ZP_00232966.1\| glycerol uptake operon antiterminator regulatory protein [Listeria mo... gi\|224499739 - gi\|224499739\|ref\|ZP_03668088.1\| hypothetical protein LmonF1_08634 [Listeria monocytogenes Finland 19... gi\|153183765, gi... - gi\|254898429\|ref\|ZP_05258353.1\| hypothetical protein LmonJ_01400 [Listeria monocytogenes J0161], gi\|... gi\|254829836, gi... - gi\|254829836\|ref\|ZP_05234491.1\| hypothetical protein Lmon1_00705 [Listeria monocytogenes 10403S], gi... gi\|254912080, gi... - gi\|254912080\|ref\|ZP_05262092.1\| hypothetical protein LmonJ2_04730 [Listeria monocytogenes J2818], gi... gi\|254827666, gi... - gi\|254827666\|ref\|ZP_05232353.1\| hypothetical protein LmonocytogeFSL_04340 [Listeria monocytogenes FS... gi\|254936407, gi... - gi\|254936407\|ref\|ZP_05268104.1\| hypothetical protein LmonF6_04720 [Listeria monocytogenes F6900], gi...	264.0	[0..1]	[182..1]
gi\|254824535 - gi\|254824535\|ref\|ZP_05229536.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes FSL ... gi\|133727318, gi... - gi\|153166799\|ref\|ZP_01927288.1\| glycerol uptake operon antiterminator regulatory protein [Listeria m... gi\|226224006, gi... - gi\|226224006\|ref\|YP_002758113.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes Cli... gi\|254992699 - gi\|254992699\|ref\|ZP_05274889.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes FSL ... gi\|133735527, gi... - gi\|254932590\|ref\|ZP_05265949.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes HPB2... gi\|254879932 - gi\|254879932\|ref\|ZP_05252642.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes FSL ... gi\|46880901, gi\|... - gi\|46907633\|ref\|YP_014022.1\| glycerol uptake operon antiterminator regulatory protein [Listeria mono... gi\|47092695, gi\|... - gi\|47092695\|ref\|ZP_00230481.1\| glycerol uptake operon antiterminator regulatory protein [Listeria mo... gi\|255522445 - gi\|255522445\|ref\|ZP_05389682.1\| anti-terminator regulatory protein GlpP [Listeria monocytogenes FSL ...	264.0	[0..1]	[182..1]
gi\|25351897, gi\|... - pir\|\|AI1612 probable anti-terminator regulatory protein homolog lin1442 [imported] - Listeria innocu... gi\|16800510 - gi\|16800510\|ref\|NP_470778.1\| hypothetical protein lin1442 [Listeria innocua Clip11262]	259.0	[0..1]	[182..1]
gi\|228951505, gi... - gi\|228951505\|ref\|ZP_04113611.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228839765, gi... - gi\|228919864\|ref\|ZP_04083220.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228657024, gi... - gi\|229126444\|ref\|ZP_04255459.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228674854, gi... - gi\|229108599\|ref\|ZP_04238211.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|218232750, gi... - gi\|218232750\|ref\|YP_002365797.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|229042878, gi... - gi\|229042878\|ref\|ZP_04190613.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228802279, gi... - gi\|228957401\|ref\|ZP_04119157.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|229189225, gi... - gi\|229189225\|ref\|ZP_04316249.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|29894731, gi\|... - gi\|30019188\|ref\|NP_830819.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|206968198, gi... - gi\|206968198\|ref\|ZP_03229154.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|228605929, gi... - gi\|229177567\|ref\|ZP_04304945.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228633986, gi... - gi\|229149344\|ref\|ZP_04277580.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229143742, gi... - gi\|229143742\|ref\|ZP_04272163.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu...	259.0	[0..3]	[182..1]
gi\|52144289, gi\|... - gi\|52144289\|ref\|YP_082538.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|49183980, gi\|... - gi\|49183980\|ref\|YP_027232.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|49480162, gi\|... - gi\|49480162\|ref\|YP_035284.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus thur... gi\|30254762, gi\|... - gi\|30261148\|ref\|NP_843525.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|47526303, gi\|... - gi\|47526303\|ref\|YP_017652.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|227007800, gi... - gi\|227816120\|ref\|YP_002816129.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|225862973, gi... - gi\|225862973\|ref\|YP_002748351.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|228944756, gi... - gi\|228944756\|ref\|ZP_04107120.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228827118, gi... - gi\|228932428\|ref\|ZP_04095309.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228926173, gi... - gi\|228926173\|ref\|ZP_04089248.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228913714, gi... - gi\|228913714\|ref\|ZP_04077340.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|229183335, gi... - gi\|229183335\|ref\|ZP_04310563.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228645682, gi... - gi\|229137825\|ref\|ZP_04266427.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229120645, gi... - gi\|229120645\|ref\|ZP_04249889.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229090076, gi... - gi\|229090076\|ref\|ZP_04221327.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|254734208 - gi\|254734208\|ref\|ZP_05191921.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254725582 - gi\|254725582\|ref\|ZP_05187364.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|229600126, gi... - gi\|229600126\|ref\|YP_002865578.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|228588189, gi... - gi\|229195334\|ref\|ZP_04322106.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|254758582 - gi\|254758582\|ref\|ZP_05210609.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254753485 - gi\|254753485\|ref\|ZP_05205521.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254740145 - gi\|254740145\|ref\|ZP_05197837.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|118476640, gi... - gi\|118476640\|ref\|YP_893791.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus thu... gi\|218539814, gi... - gi\|218902222\|ref\|YP_002450056.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|221238822, gi... - gi\|222094764\|ref\|YP_002528824.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|196044385, gi... - gi\|196044385\|ref\|ZP_03111621.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|217068312, gi... - gi\|217958615\|ref\|YP_002337163.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|190562303, gi... - gi\|190566751\|ref\|ZP_03019668.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|196031803, gi... - gi\|196037561\|ref\|ZP_03104872.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c...	259.0	[0..3]	[182..1]
gi\|42736117, gi\|... - gi\|42780199\|ref\|NP_977446.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere...	258.0	[0..3]	[182..1]
gi\|47564990, gi\|... - gi\|47564990\|ref\|ZP_00236034.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ce...	258.0	[0..3]	[182..1]
GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis GN=glpP PE=4 SV=1 GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis (strain 168) GN=glpP P...	258.0	[0..3]	[182..2]
gi\|22778163, gi\|... - gi\|23099932\|ref\|NP_693398.1\| transcriptional antiterminator of glycerol uptake operon [Oceanobacillu...	251.0	[0..1]	[182..1]
gi\|89150031, gi\|... - gi\|89201904\|ref\|ZP_01180637.1\| Glycerol-3-phosphate responsive antiterminator [Bacillus cereus subsp...	249.0	[0..3]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELPFSGQSI IPAAHNQKDM EKILELGLTY MVMLETHVAQ LKSLVKYAQA GGKKVLLHAD  60
   61 LVNGLKNDDY AIDFLCTEIC PDGIISTRGN AIMKAKQHKM LAIQRLFMID SSACNKGVAL 120
  121 IQKVQPDCIE LLPGIIPEQV QKMTQKLHIP VIAGGLIETS EQVNQVIASG AIAVTTSNKH 180
  181 LW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1vkfA
Description:	Crystal structure of Glycerol uptake operon antiterminator-related protein (TM1436) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.53572000448636	bayes_pls_golite062009
transcription antiterminator activity	1.03328675497923	bayes_pls_golite062009
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: