| Protein: | gi|42519684, gi|... |
| Organism: | Lactobacillus johnsonii NCC 533 |
| Length: | 1563 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42519684, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
422.0 | [0..2] | [1552..408] |
|
|
378.0 | [0..34] | [1316..1] |
|
|
358.0 | [0..2] | [1546..887] |
|
|
356.0 | [0..1] | [1543..568] |
|
|
350.0 | [0..370] | [1535..446] |
|
Region A: Residues: [1-189] |
1 11 21 31 41 51
| | | | | |
1 MTVPTNQTNN LNEETNQNES TVSITGAKTN DSLIAGVTQG AINVHINNHA TTPLTINHGE 60
61 QVNVSINDKN NLLSFNVNPT KTSEFDMNRT DTAANKEFTF TYTGSDDGIL SGFDATFPFN 120
121 ADTTATTQYY EKYGTYPDLT LPVTVTLPNK QSFTQNLPIK INPYEDKVIN EEILHGFIIG 180
181 PKVIWTPGE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [190-355] |
1 11 21 31 41 51
| | | | | |
1 DGNPGANGVY TEYGANYTGP EPSAKADIPV AQQKDARLMQ YAIDWNYGSS TNPSLKPLLN 60
61 VLAHIKFSSG QRILPSTIKV FKIPSNIKVV ASDGQRISIN DYYSKISTLS EDTNFENFLR 120
121 NSISNDGREI VIDQKGNFTV NGEDYSKNGP YFIQLDTQLD INKIPD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [356-591] |
1 11 21 31 41 51
| | | | | |
1 WINTPSSGPS ISTPTTNEND WNPSGSGSTA NTFTQTYTNF KLDPTVDRII KIRFIDENTN 60
61 QEIPNSAKNI ITATNSSVPN PTMDIIKDLE ERHYVLDQEA TEGKNGSHSE NLTNYNIATQ 120
121 NFKLDSLNNS YNSEEINVKN TSPKYYVYLY HETKPQSQTS SVTETINYVC ANGTKKGELA 180
181 ALPYTHTVTY TRNGIEDLVT NYIDWNSWMP DSTFNAVNSP IASDSAYSLI DPLVVP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [592-677] |
1 11 21 31 41 51
| | | | | |
1 AIETNISENG EITTQNSIPL SYTVNYYAPE KATLHFYDDT DKQDLTAYLL QNNQTAVIND 60
61 IYDKADNNST KQAISFAGVD KVIDFL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.566 | a.64.1 | Saposin |
| View | Download | 0.566 | a.64.1 | Saposin |
| View | Download | 0.532 | d.15.1 | Ubiquitin-like |
| View | Download | 0.532 | d.15.1 | Ubiquitin-like |
| View | Download | 0.511 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.511 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.507 | a.77.1 | DEATH domain |
| View | Download | 0.497 | d.76.2 | Description not found. |
| View | Download | 0.495 | d.76.2 | Description not found. |
| View | Download | 0.488 | d.76.2 | Description not found. |
| View | Download | 0.474 | d.15.1 | Ubiquitin-like |
| View | Download | 0.461 | d.15.1 | Ubiquitin-like |
| View | Download | 0.399 | d.76.2 | Description not found. |
| View | Download | 0.298 | d.76.2 | Description not found. |
|
Region A: Residues: [678-891] |
1 11 21 31 41 51
| | | | | |
1 NSKHYVFSGV SGIGSTSSSD YSKISYGNFD DDETQDQNFV LHFKHETEPI SDTKEVTETI 60
61 HYLYEDNSQA ANDVKHSVTF TKTGTKDLVT GKENSKWSAV QTFPEVVSPV ISGYTPTQSK 120
121 IAPISVDHTS NDIDKTVIYT ANKQQATLRF YDDSSKKFID FAKDLIVTGS SSSPILFTIP 180
181 KSYDFSNYNF VAVNKGDNPT QTTDSLSGTT LNDV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [892-1081] |
1 11 21 31 41 51
| | | | | |
1 TYGKFDTDNT TNQYFIAHFT HKISPVNENK SISEKAILYA ENGPRKDNIF KTLNLGNINF 60
61 IRTGQKDLVN QQITWDAWNV ENKAQNISIS EIIFNVYKLN SQNISQPSST LKKFELNGHE 120
121 ISPIEFDKKQ DQALIITLPN NFEFLIKVPY VLTENITVIY KDDTTNEILE RQVLSGQPDT 180
181 SSQYSTKNTI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1082-1203] |
1 11 21 31 41 51
| | | | | |
1 TKYLAKNYLL VSDPTNQQTL SFDNTEDPDD QTYVVHFKHQ FEEINNSKSI KETINYIYDN 60
61 GTEAAPSYTN SIQFVQSGEV DLVTNIRKIK DWTPSISSFS AVKSPIINGY TTDHKQIDQQ 120
121 FI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.357 | b.42.2 | Ricin B-like lectins |
| View | Download | 0.357 | b.42.2 | Ricin B-like lectins |
| View | Download | 0.315 | d.297.1 | Description not found. |
| View | Download | 0.281 | d.33.1 | Bacterial protein-export protein SecB |
| View | Download | 0.237 | d.20.1 | UBC-like |
| View | Download | 0.230 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.206 | b.61.1 | Avidin/streptavidin |
|
Region A: Residues: [1204-1295] |
1 11 21 31 41 51
| | | | | |
1 TPNSKDLVFN VVYTAEPVKP TKPVQPIKPM QPTKPVQPTK PVQPTKPVEP TKPVQPTKPV 60
61 QPTKPVEPTK PVQPTKPVEP TKPVQPTKPV QP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1296-1473] |
1 11 21 31 41 51
| | | | | |
1 TKPIEPTKPV KPTKPVEPTK PVKPTKPVKP TKPVEPIKPV KPTKPVQPTK PVEPIKPVKP 60
61 TKPVQPTKPV EPIKPVKPTK PVQPTKPVKP TKPVEPTKPV QPIKPVQPTK PVQPTKPVEP 120
121 TKPVEPTKPV RPTKPVEPTK PVKPTKPVEP TKPVQPTKPI EPTKPVEPTK PVQTTKPV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1474-1563] |
1 11 21 31 41 51
| | | | | |
1 EPTKPVQPTK LTISTSLHKS SDKLTQLTHQ SYQNSKVSRQ NTNNISVQKK KILPQTGTKT 60
61 TDIGILGLAL ATAASLLGLI SDKVNRKKHN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
