YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42519375, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42519375, gi|....

Description	E-value	Query Range	Subject Range
gi\|28379564, gi\|... - gi\|28379564\|ref\|NP_786456.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus plantarum ...	232.0	[0..1]	[392..1]
gi\|90961926, gi\|... - gi\|90961926\|ref\|YP_535842.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus salivarius...	231.0	[0..1]	[390..1]
gi\|58337550, gi\|... - gi\|58337550\|ref\|YP_194135.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus acidophilu...	230.0	[0..1]	[393..1]
gi\|104774315, gi... - gi\|104774315\|ref\|YP_619295.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus delbrueck...	225.0	[0..1]	[393..1]
gi\|116514405, gi... - gi\|116514405\|ref\|YP_813311.1\| cyclopropane fatty acid synthase-like protein [Lactobacillus delbrueck...	224.0	[0..1]	[393..1]
gi\|228916021, gi... - gi\|228916021\|ref\|ZP_04079594.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus thuringiensi... gi\|227813763, gi... - gi\|227813763\|ref\|YP_002813772.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis s... gi\|254738450 - gi\|254738450\|ref\|ZP_05196153.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|254723381 - gi\|254723381\|ref\|ZP_05185169.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|254685978 - gi\|254685978\|ref\|ZP_05149837.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|229604349, gi... - gi\|229604349\|ref\|YP_002867621.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis s... gi\|254761279 - gi\|254761279\|ref\|ZP_05213303.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|254752766 - gi\|254752766\|ref\|ZP_05204802.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|254742385 - gi\|254742385\|ref\|ZP_05200070.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|190564577, gi... - gi\|190564577\|ref\|ZP_03017498.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis Ts... gi\|172084142, gi... - gi\|177650190\|ref\|ZP_02933191.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|170705206, gi... - gi\|170705206\|ref\|ZP_02895671.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|47528745, gi\|... - gi\|47528745\|ref\|YP_020094.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis str. ... gi\|170684969, gi... - gi\|170684969\|ref\|ZP_02876194.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|30263365, gi\|... - gi\|30263365\|ref\|NP_845742.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis str. ... gi\|167637453, gi... - gi\|167637453\|ref\|ZP_02395733.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|167532248, gi... - gi\|167631950\|ref\|ZP_02390277.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|164715055, gi... - gi\|165868329\|ref\|ZP_02212989.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis st... gi\|49186212, gi\|... - gi\|49186212\|ref\|YP_029464.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus anthracis str. ...	223.0	[0..1]	[390..1]
gi\|116103590, gi... - gi\|48869717\|ref\|ZP_00322461.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	223.0	[0..1]	[392..1]
gi\|229128684, gi... - gi\|229128684\|ref\|ZP_04257662.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus BDRD-... gi\|228637597, gi... - gi\|229145989\|ref\|ZP_04274368.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus BDRD-... gi\|29897066, gi\|... - gi\|30021511\|ref\|NP_833142.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus ATCC 145...	223.0	[0..1]	[390..1]
gi\|152974142, gi... - gi\|89200054\|ref\|ZP_01178810.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus subsp....	222.0	[0..1]	[393..1]
gi\|52142129, gi\|... - gi\|52142129\|ref\|YP_084700.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus E33L], g... gi\|228986492, gi... - gi\|228986492\|ref\|ZP_04146628.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus thuringiensi...	222.0	[0..1]	[390..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKPLYKMM LSHSFNVPVK VTYWDGKSEI YGNGTPEVEV IFNKKIPFKE ITSNASLALG  60
   61 EAYMDKDLEI KGSIQKLIEA AYESSESFMR ASKFRKFLPK QKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.154902
Match:	1amuA
Description:	Phenylalanine activating domain of gramicidin synthetase 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [104-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEKQSQEDVQ SHYDIGNDFY KLWLDPTMTY SCAYFTNGNK DDLEAAQIAK VHHILQKLDP  60
   61 KPGKTLLDIG CGWGTLMLTA AKEYGLKVTG VTLSQEQFDL VNQKIKDMGL ENQAEVLLED 120
  121 YRELGNRDFD YVTSVGMFEH VGSENLGEYF KDVAKYLKPH GVALIHGITR QQGGATNAWI 180
  181 NKYIFPGGYI PGLVEIVSRI EEANLQIADM EMLRRHYQRT LEIWDKNFND HRLEVEGMMG 240
  241 ERFVRMWDMY LQACAASFES GNIDVIQYLL TKGPSGKTLP MTRQYMLNDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: