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View Structure Prediction Details

Protein: gi|51477443, gi|...
Organism: Arabidopsis thaliana
Length: 705 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51477443, gi|....

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
347.0 [0..6] [695..696]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVSRSSSL YTEEDPLQAY SGLSLFPRTL KSLSNPLPPS YQSEDLQQTH TLLQSMPFEI  60
   61 QSEHQEQAKA ILEDVDVDVQ LNPIPNKRER RPGLDRKRKS FSLHLTTSQP PPVAPSFDPS 120
  121 KYPRSEDFFA AYDKFELANR EWQKQTGSSV IDIQENPPSR RPRRPGIPGR KRRPFKESFT 180
  181 DSYFTDVINL EASEKEIPIA S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [202-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSLESATAA HVTTVDREVD DSTVDTDKDL NNVLKDLLAC SREELEGDGA IKLLEERLQI  60
   61 KSFNIEKFSI PEFQDVRKMN LKASGSNPPN RKSLSDIQNI LKGTNRVAVR KNSHSPSPQT 120
  121 IKHFSSPNPP VDQFSFPDIH NLLPGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [348-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQPSEVNVQP IAKDIPNTSP TNVGTVDVAS PFNDSVVKRS GEDDSHIHSG IHRSHLSRDG  60
   61 NPDICVMDSI SNRSSAMLQK NVDMRTKGKE VDVPMSESGA NRNTGDREND AEINEETDNL 120
  121 ERLAECASKE VTRPFTVEED SIPYQQGASS KSPNRAPEQY NTMGGSLEHA EHNQGLHEEE 180
  181 NVNTGSASGL QVENAPEVHK YSHKQTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [555-705]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRRKRGSSDS NVKKRSKTVH GETGGDKQMK TLPHESRAKK QTKGKSNERE EKKPKKTLTH  60
   61 EGKLFSCRKS LAAAGTKIEG GVRRSTRIKS RPLEYWRGER FLYGRIHESL TTVIGIKYAS 120
  121 PGEGKRDSRA SKVKSFVSDE YKKLVDFAAL H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle