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View Structure Prediction Details

Protein: gi|48374958, gi|...
Organism: Sorghum bicolor
Length: 585 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|48374958, gi|....

Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSASQVQE ELQQAAERQL MRNQLAAAAR SINWTYALFW SISSTRPGVL TWTDGFYNGE  60
   61 VKTRKISNSV ELTADQLVMQ RSEQLRELYE ALLSGECDRR AARPVGSLSP EDLGDTEWYY 120
  121 VVCMTYAFQP GQGLPGRSFG GNEHVWLRNA HLADSKAFPR AVLAKSIICI PLMGGVLELG 180
  181 TTDTVPEDPD LISRATAAFW EPQCPTYSEE PTSNPSANEA GE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADIVVFEDQ LGHSAMKTTT AAGNEPVSLF NASLDHITDE IDDFYSLLEE MVVRPLPLED  60
   61 SLIMVDGSNN FEVPSSPEPP SPGATTNNNG ADTSSSPADG SRATSFMAWT RSSQSCSDEA 120
  121 VAAVPVIEEP QKLLKKVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [361-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGEAWANCG GGGTAGTAQE SGIKNHVMSE RKRREKINEM FLILKSLVPS IHKAMKIHVD  60
   61 KASILTETIA YLKELQRRVQ ELESSRELTT PSETTTRTTR PRGISNESAR KKLCAGSKRE 120
  121 SPALEVDGDV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1nkpA
Description: Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [491-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKEHPWVLP KDGTSNVTVT VANTDVLLEV QCRWEELLMT RVFDAIKSLH LDVLSVQAST  60
   61 PDGFMGLKIR AQFAGSGAVV PWMISEALHK AIGKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle