YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30725698, gi\|...
Organism:	Arabidopsis thaliana
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30725698, gi|....

Description	E-value	Query Range	Subject Range
gi\|10178103, gi\|... - pir\|\|T01184 hypothetical protein T26D22.10 - Arabidopsis thaliana, gi\|3047089\|gb\|AAC13601.1\| contain...	309.0	[0..1]	[420..1]
TRUA_VIBVU - tRNA pseudouridine synthase A OS=Vibrio vulnificus GN=truA PE=3 SV=1 TRUA_VIBVU - tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=truA PE=3 SV=1 TRUA_VIBVY - tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain YJ016) GN=truA PE=3 SV=1	299.0	[0..93]	[419..1]
gi\|151939062, gi... - gi\|75855869\|ref\|ZP_00763509.1\| COG0101: Pseudouridylate synthase [Vibrio sp. Ex25], gi\|254228474\|ref...	298.0	[0..93]	[412..1]
gi\|260896240\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi\|260899991\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] TRUA_VIBPA - tRNA pseudouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tru... gi\|260878838\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi\|260365288\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] TRUA_VIBPA - tRNA pseudouridine synthase A OS=Vibrio parahaemolyticus GN=truA PE=3 SV=1	297.0	[0..93]	[419..1]
TRUA_VIBFM - tRNA pseudouridine synthase A OS=Vibrio fischeri (strain MJ11) GN=truA PE=3 SV=1 TRUA_VIBF1 - tRNA pseudouridine synthase A OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=truA PE=3 SV=1	297.0	[0..93]	[419..1]
TRUA_SHIBS - tRNA pseudouridine synthase A OS=Shigella boydii serotype 4 (strain Sb227) GN=truA PE=3 SV=1	296.0	[0..84]	[419..1]
gi\|269966027\|ref... - tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] gi\|91223605, gi\|... - gi\|91223605\|ref\|ZP_01258870.1\| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01], gi\|911916...	295.0	[0..93]	[412..1]
TRUA_SHESM - tRNA pseudouridine synthase A OS=Shewanella sp. (strain MR-4) GN=truA PE=3 SV=1	295.0	[0..93]	[416..1]
TRUA_SHEAM - tRNA pseudouridine synthase A OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=truA PE=3 S...	294.0	[0..93]	[411..1]
TRUA_SHESA - tRNA pseudouridine synthase A OS=Shewanella sp. (strain ANA-3) GN=truA PE=3 SV=1	294.0	[0..93]	[416..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRVYVHYH HADACSKARW NARETFRFMY DRPWQHVLDF YSNAVEGNLS VLSLFQPKKS  60
   61 LVHDDGITEE MLLESEPETS TRKDGRSGRW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.684	a.7.16	Description not found.
View	Download	0.439	a.144.1	PABC (PABP) domain
View	Download	0.439	a.144.1	PABC (PABP) domain
View	Download	0.439	a.7.14	Description not found.
View	Download	0.427	d.293.1	Description not found.
View	Download	0.395	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.395	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.386	a.7.6	Ribosomal protein S20
View	Download	0.329	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.291	a.23.4	Mitochondrial import receptor subunit Tom20

Predicted Domain #2

Region A:
Residues: [91-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERVNFKIVLS YNGASFDGWQ KQPDLHTVQG VVEKSLGGFV DERKAQLLKK KCKPLEGRVL  60
   61 VAGRTDKGVS ALNQVCSFYT WRKDIEPIAI EDAINKDASG KLRVVSISKV SRSFHPNFSA 120
  121 KWRRYLYIFP LDDAEPLRKS GENHENFIFD ENKKKQRNGL LSEEIAEEVI MSEDDELEIE 180
  181 ETSNALEVVE KPSDFSVSKV DQLLQHLQGK VLSYKMFARD TKAARNEGPP TECFMYHARA 240
  241 AEIRLSSSDC VEGRRVMCVE LVANRFLRKM VRVLVATSIR EAAAGAEDDA LLKLLEASCR 300
  301 RATAPPAPSE GLCLFDVGYT DFDPQTSLIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.522879
Match:	2nqpA
Description:	No description for 2nqpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits