YRC Public Data Repository - Protein Structure Prediction

Protein:	OBGC_ARATH
Organism:	Arabidopsis thaliana
Length:	681 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OBGC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|226224138, gi... - gi\|226224138\|ref\|YP_002758245.1\| hypothetical protein Lm4b_01547 [Listeria monocytogenes Clip81459],... gi\|224499802 - gi\|224499802\|ref\|ZP_03668151.1\| GTPase ObgE [Listeria monocytogenes Finland 1988] gi\|224501523 - gi\|224501523\|ref\|ZP_03669830.1\| GTPase ObgE [Listeria monocytogenes FSL R2-561] gi\|126943540, gi... - gi\|254898297\|ref\|ZP_05258221.1\| GTPase ObgE [Listeria monocytogenes J0161], gi\|153183888\|ref\|ZP_0193... gi\|254829704, gi... - gi\|254829704\|ref\|ZP_05234359.1\| GTPase ObgE [Listeria monocytogenes 10403S], gi\|153196828\|ref\|ZP_019... gi\|153190975, gi... - gi\|254912211\|ref\|ZP_05262223.1\| GTPase ObgE [Listeria monocytogenes J2818], gi\|153190975\|ref\|ZP_0193... gi\|153166986, gi... - gi\|254873444\|ref\|ZP_05246154.1\| GTPase ObgE [Listeria monocytogenes FSL N1-017], gi\|153166986\|ref\|ZP... gi\|254828229, gi... - gi\|254828229\|ref\|ZP_05232916.1\| GTPase ObgE [Listeria monocytogenes FSL N3-165], gi\|153174696\|ref\|ZP... OBG_LISMF - GTPase Obg OS=Listeria monocytogenes serotype 4b (strain F2365) GN=obg PE=3 SV=1 gi\|254936539, gi... - gi\|254936539\|ref\|ZP_05268236.1\| GTPase ObgE [Listeria monocytogenes F6900], gi\|153179572\|ref\|ZP_0193... OBG_LISMO - GTPase Obg OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=obg PE=3 SV=1 gi\|153202460, gi... - gi\|254931472\|ref\|ZP_05264831.1\| GTPase ObgE [Listeria monocytogenes HPB2262], gi\|153202460\|ref\|ZP_01... gi\|47097677, gi\|... - gi\|47097677\|ref\|ZP_00235191.1\| GTP-binding protein, GTP1/OBG family [Listeria monocytogenes str. 1/2... gi\|47017367, gi\|... - gi\|47094261\|ref\|ZP_00231970.1\| GTP-binding protein, GTP1/OBG family [Listeria monocytogenes str. 4b ... OBG_LISMO - GTPase obg OS=Listeria monocytogenes GN=obg PE=3 SV=1 gi\|255522334 - gi\|255522334\|ref\|ZP_05389571.1\| GTPase ObgE [Listeria monocytogenes FSL J1-175] gi\|254992893 - gi\|254992893\|ref\|ZP_05275083.1\| GTPase ObgE [Listeria monocytogenes FSL J2-064] gi\|254878974 - gi\|254878974\|ref\|ZP_05251684.1\| GTPase ObgE [Listeria monocytogenes FSL J2-071] gi\|254852161 - gi\|254852161\|ref\|ZP_05241509.1\| GTPase ObgE [Listeria monocytogenes FSL R2-503] gi\|254824404 - gi\|254824404\|ref\|ZP_05229405.1\| GTPase ObgE [Listeria monocytogenes FSL J1-194]	366.0	[0..210]	[656..2]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISINCFF TPQALARPSR TRKIFAKPDK VSGRTRSPRK TKLQREVELK SRGGDKLQPV  60
   61 SDAGGEATTY TRLPPREDYY DVSLLSSSYL KVSEEVKLSE SNVARVEEKI ETLREIEEEE 120
  121 KEKEVKSYDD DDIWGNYRRL DVFEGSSRSI DEDDEDWEDE VFEYGDETDA EKDDSEGSEL 180
  181 KDGEVLCFSG EEEEDEIGVK EKGVPAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCFDRAKIY VRAGDGGNGV VAFRREKFVP FGGPSGGDGG RGGNVYVEVD GSMNSLLPFR  60
   61 KSVHFRAGRG EHGRGKMQSG AKGDNVVVKV APGTVVRQAR EVGSEVEGEE GEEKEVLLEL 120
  121 LHPGQRALLL PGGRGGRGNA SFKSGMNKVP RIAENGEEGP EMWLDLELKL VADVGIVGAP 180
  181 NAGKSTLLSV ISAAQPTIAN YPFTTLLPNL GVVSFDYDST MVVADLPGLL EGAHRGFGLG 240
  241 HEFLRHTERC SALVHVVDGS APQPELEFEA VRLELELFSP EIAEKPYVVA YNKMDLPDAY 300
  301 EKWPMFQETL RARGIEPFCM SAVQREGTHE VISSVYELLK KYRAANA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.0
Match:	1lnzA
Description:	Obg GTP-binding protein N-terminal domain; Obg GTP-binding protein C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
two-component response regulator activity	1.45919623810582	bayes_pls_golite062009
binding	1.30574971150356	bayes_pls_golite062009
purine ribonucleotide binding	0.0324692870996578	bayes_pls_golite062009
ribonucleotide binding	0.0319901144782286	bayes_pls_golite062009
purine nucleotide binding	0.0199205367873159	bayes_pls_golite062009
nucleotide binding	0.00540039127746217	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [555-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPKALFDQAN ENLDHVAKKI DKERRAAINE FEVFRDSGTR AWHVVGAGLQ RFVQMTNWRY  60
   61 MDSDKRFQHV LDACGVNKSL KNMGVKEGDT VIVGEMELIW HDSANGSSRP TDSNKTSTDS 120
  121 VRWPQWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1zo1I
Description:	IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: