YRC Public Data Repository - Protein Structure Prediction

Protein:	BAGP1_ARATH
Organism:	Arabidopsis thaliana
Length:	594 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAGP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|6996302, gi\|1... - gi\|6996302\|emb\|CAB75463.1\| putative protein [Arabidopsis thaliana], pir\|\|T49307 hypothetical protein...	334.0	[0..1]	[594..1]
gi\|115480165, gi... - gi\|50726252\|dbj\|BAD33828.1\| C2 domain-containing protein-like [Oryza sativa Japonica Group], gi\|1154...	292.0	[0..72]	[593..80]
gi\|76624485 - gi\|76624485\|ref\|XP_609168.2\| PREDICTED: similar to unc-13 homolog B isoform 1 [Bos taurus]	267.0	[0..12]	[562..915]
gi\|12408320, gi\|... - gi\|915330\|gb\|AAC52267.1\| Munc13-2, pir\|\|I61776 Munc13-2 - rat, gi\|12408320\|ref\|NP_074053.1\| unc-13 h...	264.0	[0..12]	[562..910]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSAVEVLL PSAWEIEVAV VASVFLIASY WLFAYRGGGD DDVVGVGFDR SRLMQNLDSG  60
   61 DAFDKDKIGH LRGDTQTNAA YIVKVELLAA KNLIGANLNG TSDPYAIVNC GSEKRFSSMV 120
  121 PGSRNPMWGE EFNFPTDELP AKINVTIHDW DIIWKSTVLG SVTINVEREG QTGPVWHSLD 180
  181 SPSGQVCLNI NAIKLPVNAP RAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1dqvA
Description:	Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [204-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGYAGAGRRR VTLDQQGPTI VHQKPGPLQT IFDLLPDEVV EHSYSCALER SFLYHGRMYV  60
   61 SAWHICFHSN VFSKQMKVVV PLGDIDEIRR SQHALINPAI TIILRMGAGG HGVPPL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.017729
Match:	PF02893.11
Description:	No description for PF02893.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [320-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTPDGRVRYK FASFWNRNHT LKALQRAVNN YHAMLEVEKK ERAQSALRAH SSSVKGGGKV  60
   61 QVKAPEDTAA VPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.809	a.29.8	Description not found.

Predicted Domain #4

Region A:
Residues: [393-594]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFQAFIKEEV LVNIYNDVFA STPEQVLNVL LADDSTYTNE YRSARKDKNL NIEPWHTAEE  60
   61 YDGQVREIKF RSICNSPMCP PDTAVTEWQH VVLSPDKKVL VFETVQQPHD VPFGSYFEVH 120
  121 CRWRLEAKDE TSSVIDIRVG VHFKKWCLMQ SKIKAGAIDE YKKEVEVMLE VALSYLKSHS 180
  181 SSSSHGDIDK SALSSPTPEN IS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	2pcsA
Description:	No description for 2pcsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits