YRC Public Data Repository - Protein Structure Prediction

Protein:	LCAT4_ARATH
Organism:	Arabidopsis thaliana
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCAT4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|33317918 - gi\|33317918\|gb\|AAQ04833.1\|AF465780_1 lecithine cholesterol acyltransferase-like protein [Lycopersico...	454.0	[0..1]	[535..1]
gi\|218195572 - gi\|218195572\|gb\|EEC77999.1\| hypothetical protein OsI_17392 [Oryza sativa Indica Group] gi\|115460534, gi... - gi\|50928711\|ref\|XP_473883.1\| OSJNBa0008M17.7 [Oryza sativa (japonica cultivar-group)], gi\|38344254\|e...	430.0	[0..3]	[535..2]
gi\|7452457, gi\|7... - pir\|\|T04767 hypothetical protein T16H5.220 - Arabidopsis thaliana, gi\|7268782\|emb\|CAB78988.1\| putati...	417.0	[0..1]	[535..1]
gi\|33318329 - gi\|33318329\|gb\|AAQ05032.1\|AF468223_1 phospholipase A1 [Nicotiana tabacum]	301.0	[0..30]	[446..24]
gi\|158262015, gi... - gi\|60688171\|gb\|AAH91155.1\| Lecithin cholesterol acyltransferase [Rattus norvegicus], gi\|2306762\|gb\|A...	290.0	[0..23]	[453..38]
LCAT_PAPAN - Phosphatidylcholine-sterol acyltransferase OS=Papio anubis GN=LCAT PE=2 SV=1 gi\|483302 - gi\|483302\|pir\|\|JC1502 phosphatidylcholine-sterol O-acyltransferase (EC 2.3.1.43) precursor - baboon	290.0	[0..23]	[452..38]
gi\|5931728, gi\|1... - gi\|5931728\|emb\|CAB56610.1\| lectin cholesterol acyltransferase [Homo sapiens], gi\|187025\|gb\|AAA59499....	289.0	[0..23]	[448..22]
gi\|73957241 - gi\|73957241\|ref\|XP_851673.1\| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase precur...	288.0	[0..23]	[451..36]
gi\|86826424, gi\|... - gi\|86826424\|gb\|AAI12485.1\| Lecithin-cholesterol acyltransferase [Bos taurus], gi\|76640158\|ref\|XP_588...	288.0	[0..23]	[449..38]

Back

Predicted Domain #1

Region A:
Residues: [1-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLLEEIIR SVEALLKLRN RNQEPYVDPN LNPVLLVPGI AGSILNAVDH ENGNEERVWV  60
   61 RIFGADHEFR TKMWSRFDPS TGKTISLDPK TSIVVPQDRA GLHAIDVLDP DMIVGRESVY 120
  121 YFHEMIVEMI GWGFEEGKTL FGFGYDFRQS NRLQETLDQF AKKLETVYKA SGEKKINVIS 180
  181 HSMGGLLVKC FMGLHSDIFE KYVQNWIAIA APFRGAPGYI TSTLLNGMSF VNGWEQNFFV 240
  241 SKWSMHQLLI ECPSIYELMC CPYFKWELPP VLELWREKES NDGVGTSYVV LESYCSLESL 300
  301 EVFTKSLSNN TADYCGESID LPFNWKIMEW AHKTKQVLAS AKLPPKVKFY NIYGTNLETP 360
  361 HSVCYGNEKM PVKDLTNLRY FQPTYICVDG DGTVPMESAM ADGLEAVARV GVPGEHRGIL 420
  421 NDHRVFRMLK KWLNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1ji3A
Description:	Lipase L1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [436-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEPDPFYNPV NDYVILPTTY EFEKFHENGL EVASVKESWD IISDDNNIGT TGSTVNSISV  60
   61 SQPGDDQNPQ AEARATLTVQ PQSDGRQHVE LNAVSVSVDA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits