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View Structure Prediction Details

Protein: SAD1_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAD1_YEAST.

Description E-value Query
Range
Subject
Range
gi|13926071 - gi|13926071|gb|AAK49524.1|AF353989_1 U4/U6.U5 tri-snRNP-associated 65 kDa protein [Homo sapiens]
3.0E-95 [1..448] [70..556]
SNUT2_MOUSE - U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=1 SV=2
2.0E-94 [1..448] [69..555]
gi|33589748, gi|... - gi|33589748|gb|AAQ22640.1| At4g22410/F7K2_7 [Arabidopsis thaliana], gi|22328871|ref|NP_193966.2| ubi...
5.0E-85 [2..448] [44..509]
CE20660 - ubiquitin protease status:Partially_confirmed UniProt:O44787 protein_id:AAD34652.1
1.0E-84 [2..445] [107..584]
ubp10 - ubiquitin C-terminal hydrolase Ubp10
UBP10_SCHPO - Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10...
2.0E-75 [1..446] [29..500]
SAD1 - Conserved zinc-finger domain protein involved in pre-mRNA splicing, required for assembly of U4 snRN...
SAD1_YEAST - Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 ...
1.0E-74 [1..448] [1..448]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDNKRRHS EDELKQEAVK KIKSQEPNYA YLETVVREKL DFDSEKICCI TLSPLNVYCC  60
   61 LVCGHYYQGR HEKSPAFIHS IDENHHVFLN LTSLKFYMLP QNVQILHDGE VQLLNSIKFA 120
  121 AYPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YCPKDLEDFP RQCFDLSNRT YLNGFIGFTN AATYDYAHSV LLLISHMVPV RDHFLLNHFD  60
   61 NQGEFIKRLS ICVKKIWSPK LFKHHLSVDD FVSYLKVREG LNLNPIDPRL FLLWLFNKIC 120
  121 SSSNDLKSIL NHSCKGKVKI AKVENKPEAS ESVTGKVIVK PFWVLTLDLP EFSPFEDGNS 180
  181 VDDLPQINIT KLLTKFTKSR SSSTSTVFEL TRLPQFLIFH FNRFDRNSDH PVKNRNQTLV 240
  241 EFSSELEILH VKYRLKANVV HVVIKQPSTD GNAFNGDEKS HWITQLYDNK SEKWIEIDGI 300
  301 NTTEREAELL FLKETFIQVW EKQE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle