YRC Public Data Repository - Protein Structure Prediction

Protein:	UPS2_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPS2_YEAST.

Description	E-value	Query Range	Subject Range
UPS2 - Mitochondrial intermembrane space protein involved in regulation of mitochondrial cardiolipin and ph... gi\|190405240 - gi\|190405240\|gb\|EDV08507.1\| protein MSF1 [Saccharomyces cerevisiae RM11-1a] gi\|207343005 - gi\|207343005\|gb\|EDZ70602.1\| YLR168Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941014 - gi\|151941014\|gb\|EDN59394.1\| conserved protein [Saccharomyces cerevisiae YJM789] UPS2_YEAST - Protein UPS2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UPS2 PE=1 SV...	1.0E-87	[1..230]	[1..230]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-67	[2..197]	[3..201]
PRLD1_MOUSE - PRELI domain-containing protein 1, mitochondrial OS=Mus musculus GN=Prelid1 PE=1 SV=1	8.0E-66	[1..179]	[2..179]
gi\|209736870 - gi\|209736870\|gb\|ACI69304.1\| PRELI domain-containing protein 1, mitochondrial precursor [Salmo salar] PRELID1 - PRELI domain containing 1 gi\|123995091, gi... - gi\|123995091\|gb\|ABM85147.1\| px19-like protein [synthetic construct], gi\|123980278\|gb\|ABM81968.1\| px1...	2.0E-65	[1..179]	[2..179]
slmo-PC, slmo-PB... - The gene slowmo is referred to in FlyBase by the symbol Dmel\slmo (CG9131, FBgn0029161). It is a pro... gi\|195342908, gi... - gi\|195342908\|ref\|XP_002038040.1\| GM17966 [Drosophila sechellia], gi\|194132890\|gb\|EDW54458.1\| GM17966... gi\|194190326, gi... - gi\|195576912\|ref\|XP_002078317.1\| GD22604 [Drosophila simulans], gi\|194190326\|gb\|EDX03902.1\| GD22604 ... gi\|220945270, gi... - gi\|220955084\|gb\|ACL90085.1\| slmo-PA [synthetic construct], gi\|220945270\|gb\|ACL85178.1\| slmo-PA [synt...	9.0E-59	[1..199]	[1..197]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFQNSYDF NYPWDQVTAA NWKKYPNEIS THVIAVDVLR RELKDQGKVL VTERLITVKQ  60
   61 GVPKWIMMML GGTNMSHVRE VSVVDLNKKS LTMRSCNLTM CNLLKVYETV TYSPHPDDSA 120
  121 NKTLFQQEAQ ITAYGSIRKL CNKMEDWSVQ RFCENAKKGK MGFDAVLQVF SENWEKHVDD 180
  181 LSNQLVSKVN ETMEDVKISA GTLLKGTERS GRTILQQNID LFRDAYNHEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.543	N/A	N/A	f.4.1	OMPA-like
View	Download	0.391	N/A	N/A	a.1.1	Globin-like
View	Download	0.388	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.384	N/A	N/A	d.32.1	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View	Download	0.361	N/A	N/A	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [148-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVQRFCENAK KGKMGFDAVL QVFSENWEKH VDDLSNQLVS KVNETMEDVK ISAGTLLKGT  60
   61 ERSGRTILQQ NIDLFRDAYN HEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits