YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|537066\|gb\|AAA...
Organism:	Escherichia coli str. K-12 substr. MG1655
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|537066|gb|AAA....

Description	E-value	Query Range	Subject Range
gi\|15834456, gi\|... - gi\|15834456\|ref\|NP_313229.1\| suppressor of inhibitory function of ChpB [Escherichia coli O157:H7], g... gi\|25299147, gi\|... - pir\|\|B91279 suppressor of inhibitory function of ChpB [imported] - Escherichia coli (strain O157:H7,... gi\|15804815, gi\|... - gi\|15804815\|ref\|NP_290856.1\| antitoxin ChpS [Escherichia coli O157:H7 EDL933], gi\|12519226\|gb\|AAG594... gi\|187770257, gi... - gi\|187775900\|ref\|ZP_02799066.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4196], gi\|187770257\|... gi\|15834456, gi\|... - gi\|15834456\|ref\|NP_313229.1\| antitoxin ChpS [Escherichia coli O157:H7 str. Sakai], gi\|13364679\|dbj\|B... gi\|217326146, gi... - gi\|217326146\|ref\|ZP_03442230.1\| pemI protein 2 [Escherichia coli O157:H7 str. TW14588], gi\|217322367... gi\|209161649, gi... - gi\|209400249\|ref\|YP_002273767.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4115], gi\|209161649... gi\|208820070, gi... - gi\|208820070\|ref\|ZP_03260390.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4042], gi\|208740193\|... gi\|189403832, gi... - gi\|189403832\|ref\|ZP_02785479.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4501], gi\|189368875\|... gi\|189357814, gi... - gi\|189402053\|ref\|ZP_02779807.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4401], gi\|189357814\|... gi\|189010532, gi... - gi\|189010532\|ref\|ZP_02807752.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4076], gi\|188999744\|... gi\|188025112, gi... - gi\|188025112\|ref\|ZP_02776107.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC4113], gi\|188014825\|... gi\|208735137, gi... - gi\|208813860\|ref\|ZP_03255189.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4045], gi\|208735137\|... gi\|208808171, gi... - gi\|208808171\|ref\|ZP_03250508.1\| pemI protein 2 [Escherichia coli O157:H7 str. EC4206], gi\|208727972\|... gi\|189405587, gi... - gi\|189405587\|ref\|ZP_02822806.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC508], gi\|189379518\|g... gi\|189404630, gi... - gi\|189404630\|ref\|ZP_02809874.2\| pemI protein 2 [Escherichia coli O157:H7 str. EC869], gi\|189374978\|g...	108.0	[0..1]	[85..1]
gi\|82779483, gi\|... - gi\|82779483\|ref\|YP_405832.1\| antitoxin ChpS [Shigella dysenteriae Sd197], gi\|81243631\|gb\|ABB64341.1\|...	104.0	[0..1]	[85..1]
gi\|194415306, gi... - gi\|194426567\|ref\|ZP_03059121.1\| pemI protein 2 [Escherichia coli B171], gi\|194415306\|gb\|EDX31574.1\| ... EG11250 - antitoxin of the ChpBS toxin-antitoxin system / ChpS antitoxin, toxin is ChpB gi\|170083668, gi... - gi\|170083668\|ref\|YP_001732988.1\| antitoxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli... gi\|218697975, gi... - gi\|218697975\|ref\|YP_002405642.1\| antitoxin ChpS [Escherichia coli 55989], gi\|218354707\|emb\|CAV01742.... gi\|218363544, gi... - gi\|218556775\|ref\|YP_002389689.1\| antitoxin ChpS [Escherichia coli IAI1], gi\|218363544\|emb\|CAR01198.1... gi\|209921720, gi... - gi\|209921720\|ref\|YP_002295804.1\| antitoxin ChpS [Escherichia coli SE11], gi\|209914979\|dbj\|BAG80053.1... gi\|89110944, gi\|... - gi\|89110944\|ref\|AP_004724.1\| antitoxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str... gi\|238903329, gi... - gi\|238903329\|ref\|YP_002929125.1\| antitoxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli... EG11250 - antitoxin of the ChpBS toxin-antitoxin system / ChpS antitoxin, toxin is ChpB CHPS_ECOLI - PemI-like protein 2 - Escherichia coli gi\|157163698, gi... - gi\|157163698\|ref\|YP_001461016.1\| antitoxin ChpS [Escherichia coli HS], gi\|157069378\|gb\|ABV08633.1\| p... gi\|157078846, gi... - gi\|157156816\|ref\|YP_001465731.1\| antitoxin ChpS [Escherichia coli E24377A], gi\|157078846\|gb\|ABV18554...	103.0	[0..3]	[85..1]
gi\|238798841, gi... - gi\|77960574\|ref\|ZP_00824439.1\| COG2336: Growth regulator [Yersinia mollaretii ATCC 43969], gi\|238798...	102.0	[0..3]	[85..1]
gi\|67534540, gi\|... - gi\|67544325\|ref\|ZP_00422254.1\| PemI-like protein [Burkholderia vietnamiensis G4], gi\|67534540\|gb\|EAM...	99.0	[0..3]	[85..1]
tr\|E4R4D7\|E4R4D7... - PemI-like protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_0816 PE=4 SV=1 gi\|26987506, gi\|... - gi\|26987506\|ref\|NP_742931.1\| PemI-like protein [Pseudomonas putida KT2440], gi\|24982173\|gb\|AAN66395....	96.0	[0..3]	[84..1]
gi\|75704791, gi\|... - gi\|75911066\|ref\|YP_325362.1\| transcriptional regulator/antitoxin MazE [Anabaena variabilis ATCC 2941...	96.0	[0..3]	[85..1]
gi\|17132307, gi\|... - gi\|17230704\|ref\|NP_487252.1\| cell growth regulatory protein [Nostoc sp. PCC 7120], gi\|17132307\|dbj\|B... gi\|25532381 - pir\|\|AE2207 cell growth regulatory protein mazE [imported] - Nostoc sp. (strain PCC 7120)	95.0	[0..3]	[85..1]
gi\|6458096, gi\|1... - gi\|6458096\|gb\|AAF09994.1\|AE001901_9 ppGpp-regulated growth inhibitor suppressor ChpR/MazE, putative ... gi\|7473639 - pir\|\|A75523 probable ppGpp-regulated growth inhibitor suppressor ChpR/ MazE - Deinococcus radioduran...	92.0	[0..3]	[85..1]
gi\|59938898, gi\|... - gi\|59938898\|gb\|AAX12222.1\| probable plasmid stable inheritance protein I [Xanthomonas axonopodis pv....	91.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMRITIKRW GNSAGMVIPN IVMKELNLQP GQSVEAQVSN NQLILTPISR RYSLDELLAQ  60
   61 CDMNAAELSE QDVWGKSTPA GDEIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	0.731138890864637	bayes_pls_golite062009
binding	0.55634251837907	bayes_pls_golite062009
transcription regulator activity	0.21694660823753	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: