YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: acl-11
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-11.

Description E-value Query
Range
Subject
Range
gi|187023381, gi... - gi|39580855|emb|CAE73116.1| Hypothetical protein CBG20497 [Caenorhabditis briggsae], gi|187023381|em...
238.0 [0..1] [368..1]

Back

Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISLTIAVD ALRPIIPCSL LSLSMVPFAS CAIVIGGVSW IVPRHVAQQL DNMLYKSYMR  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCLFVFENLS GVEIYLHGTN EEVVNKTGKP ENAVMISNHQ SNVDWIIPVM LAARHGDQGN  60
   61 EQAFRVMVKN SIHLVPMFGW YIFQHGYIYV RRFGEFIGAP VLRQLKWLNE SDPPYWLLIF 120
  121 PEGTRNSAKK KHLLESSNRF LEKSGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [207-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPMQNVLCPR SGGLQLALDN LSTLDAIYDV TVMYGQMRMA ERRGLAPGMF DFCCGSQQFK  60
   61 QLHIHLDRIP IDEVPKAKLE LRTWTIERFT KKERIIDEFY SEKPSTGSAL PCVPISQTLP 120
  121 STLFFSAALL APFFSRTIGR IYLLTIASSP LLIAWLHIRK CV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle