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View Structure Prediction Details

Protein: acl-11
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-11.

Description E-value Query
Range
Subject
Range
gi|187023381, gi... - gi|39580855|emb|CAE73116.1| Hypothetical protein CBG20497 [Caenorhabditis briggsae], gi|187023381|em...
238.0 [0..1] [368..1]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISLTIAVD ALRPIIPCSL LSLSMVPFAS CAIVIGGVSW IVPRHVAQQL DNMLYKSYMR  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCLFVFENLS GVEIYLHGTN EEVVNKTGKP ENAVMISNHQ SNVDWIIPVM LAARHGDQGN  60
   61 EQAFRVMVKN SIHLVPMFGW YIFQHGYIYV RRFGEFIGAP VLRQLKWLNE SDPPYWLLIF 120
  121 PEGTRNSAKK KHLLESSNRF LEKSGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [207-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPMQNVLCPR SGGLQLALDN LSTLDAIYDV TVMYGQMRMA ERRGLAPGMF DFCCGSQQFK  60
   61 QLHIHLDRIP IDEVPKAKLE LRTWTIERFT KKERIIDEFY SEKPSTGSAL PCVPISQTLP 120
  121 STLFFSAALL APFFSRTIGR IYLLTIASSP LLIAWLHIRK CV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle