YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSMMUT000000325...
Organism:	Macaca mulatta
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSMMUT000000325....

Description	E-value	Query Range	Subject Range
gi\|74151210, gi\|... - gi\|74151210\|dbj\|BAE27725.1\| unnamed protein product [Mus musculus], gi\|74147160\|dbj\|BAE27488.1\| unna...	0.0	[1..331]	[1..329]
gi\|108743256 - gi\|108743256\|dbj\|BAE95404.1\| LIM-domain-binding protein 2b [Gallus gallus]	0.0	[1..331]	[1..330]
LDB2 - LIM domain binding 2 gi\|109073801 - gi\|109073801\|ref\|XP_001101329.1\| PREDICTED: similar to LIM domain binding 2 isoform 2 [Macaca mulatt... gi\|123982183, gi... - gi\|123996991\|gb\|ABM86097.1\| LIM domain binding 2 [synthetic construct], gi\|123982183\|gb\|ABM82907.1\| ... CCDS3420.1_1 - null gi\|67970922 - gi\|67970922\|dbj\|BAE01803.1\| unnamed protein product [Macaca fascicularis]	0.0	[1..314]	[1..314]
gi\|86820695, gi\|... - gi\|86820695\|gb\|AAI05322.1\| LIM domain binding 2 [Bos taurus], gi\|114051570\|ref\|NP_001040076.1\| LIM d...	0.0	[1..314]	[1..312]
gi\|114593280 - gi\|114593280\|ref\|XP_001161726.1\| PREDICTED: LIM domain binding 2 isoform 2 [Pan troglodytes]	0.0	[1..314]	[1..314]
gi\|157822259, gi... - gi\|157822259\|ref\|NP_001099479.1\| LIM domain binding 2 [Rattus norvegicus], gi\|149047267\|gb\|EDL99936....	0.0	[1..314]	[1..314]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTPHDPFY SSPFGPFYRR HTPYMVQPEY RIYEMNKRLQ SRTEDSDNLW WDAFATEFFE  60
   61 DDATLTLSFC LEDGPKRYTI GRTLIPRYFS TVFEGGVTDL YYILKHSKES YHNSSITVDC 120
  121 DQCTMVTQHG KPMFTKVCTE GRLILEFTFD DLMRIKTWHF TIRQYRELVP RSILAMHAQD 180
  181 PQVLDQLSKN ITRMGLTNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [200-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLNYLRLCVI LEPMQELMSR HKTYNLSPRD CLKTCLFQKW QRMVAPPAEP TRQPTTKRRK  60
   61 RKNSTSSTSN SSAGNNANST GSKKKTTAAN LSLSSQVPGL GAIPNCSLNP GRDGDLCHST 120
  121 AVTPSGQFKE KH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits