YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17548064
Organism:	Ralstonia solanacearum GMI1000
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17548064.

Description	E-value	Query Range	Subject Range
HMRR_SINMW - HTH-type transcriptional regulator HmrR OS=Sinorhizobium medicae (strain WSM419) GN=hmrR PE=1 SV=1 HMRR_RHIME - HTH-type transcriptional regulator hmrR - Rhizobium meliloti (Sinorhizobium meliloti)	141.0	[0..15]	[154..1]
gi\|82736997, gi\|... - gi\|82736997\|ref\|ZP_00899851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas putida F1], g... gi\|24981972, gi\|... - gi\|26987323\|ref\|NP_742748.1\| MerR family transcriptional regulator [Pseudomonas putida KT2440], gi\|2... tr\|I7BDC5\|I7BDC5... - MerR family transcriptional regulator OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3756 PE=4 SV=1	139.0	[0..15]	[150..1]
gi\|68348510, gi\|... - gi\|70734211\|ref\|YP_257851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas fluorescens Pf-...	138.0	[0..15]	[148..1]
gi\|197247472, gi... - gi\|197247472\|ref\|YP_002145333.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica sub... gi\|197243859, gi... - gi\|197265604\|ref\|ZP_03165678.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subs... gi\|194468531, gi... - gi\|194468531\|ref\|ZP_03074515.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subs... gi\|194713111, gi... - gi\|194737609\|ref\|YP_002113383.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica sub... gi\|16418855, gi\|... - gi\|16763734\|ref\|NP_459349.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164... gi\|194442534, gi... - gi\|194442534\|ref\|YP_002039591.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica sub... gi\|62178965, gi\|... - gi\|62178965\|ref\|YP_215382.1\| putative transcriptional regulator [Salmonella enterica subsp. enterica... gi\|194448626, gi... - gi\|194448626\|ref\|YP_002044384.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica sub... gi\|195631968, gi... - gi\|195631968\|gb\|EDX50488.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|205344066, gi... - gi\|205344066\|gb\|EDZ30830.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|168237458, gi... - gi\|197289488\|gb\|EDY28851.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|205339953, gi... - gi\|205339953\|gb\|EDZ26717.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=STM14_0413] [protein=putative transcriptional regulator] [protein_id=YP_005236029.1] [location... gi\|167992189, gi... - gi\|205329482\|gb\|EDZ16246.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|205333476, gi... - gi\|205333476\|gb\|EDZ20240.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|161364837, gi... - gi\|161615473\|ref\|YP_001589438.1\| hypothetical protein SPAB_03244 [Salmonella enterica subsp. enteric... gi\|205323514, gi... - gi\|205323514\|gb\|EDZ11353.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subsp. e... gi\|238913268 - gi\|238913268\|ref\|ZP_04657105.1\| putative transcriptional regulator [Salmonella enterica subsp. enter... gi\|206707639, gi... - gi\|207855836\|ref\|YP_002242487.1\| putative transcriptional regulatory protein [Salmonella enterica su... gi\|224466719, gi... - gi\|224582192\|ref\|YP_002635990.1\| putative transcriptional regulator [Salmonella enterica subsp. ente... gi\|200389485, gi... - gi\|200389485\|ref\|ZP_03216096.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subs... gi\|204927200, gi... - gi\|204927200\|ref\|ZP_03218402.1\| Cu(I)-responsive transcriptional regulator [Salmonella enterica subs...	137.0	[0..15]	[159..1]
HMRR2_RHIME, HMR... - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti GN=hmrR2 PE=3 SV=1, (P58379) H... HMRR2_RHIME - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti (strain 1021) GN=hmrR2 PE=3 SV...	136.0	[0..15]	[154..1]
tr\|Q889K0\|Q889K0... - Transcriptional regulator, heavy metal-dependent OS=Pseudomonas syringae pv. tomato (strain DC3000) ... gi\|28851213, gi\|... - gi\|28867977\|ref\|NP_790596.1\| transcriptional regulator, heavy metal-dependent [Pseudomonas syringae ...	136.0	[0..15]	[147..1]
gi\|72120470, gi\|... - gi\|73543057\|ref\|YP_297577.1\| MerR family transcriptional regulator [Ralstonia eutropha JMP134], gi\|7...	136.0	[0..15]	[152..1]
gi\|76882052, gi\|... - gi\|77163738\|ref\|YP_342263.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani ATCC 1... gi\|207088264 - gi\|207088264\|gb\|EDZ65536.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC27] gi\|224408610, gi... - gi\|254435153\|ref\|ZP_05048660.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC...	136.0	[0..14]	[148..1]
gi\|104779921, gi... - gi\|95108908\|emb\|CAK13604.1\| putative transcription regulator heavy metal-dependent MerE family [Pseu... gi\|95108908 - gi\|95108908\|emb\|CAK13604.1\| putative transcription regulator heavy metal-dependent MerE family [Pseu...	136.0	[0..15]	[148..1]
gi\|71733260, gi\|... - gi\|71733260\|ref\|YP_276749.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas syringae pv. ph...	135.0	[0..15]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRADLNDAS QDGPVNIGEA ARASGVSAKM IRYYERIGLL PPSPRTEGNY RVYDPRALHV  60
   61 LRFIHRARSL GFSLEEIRTL LSLWHDRARA SADVKAITLR HVADLDARIR ELQGMRDTLV 120
  121 TLADACHGDD RPDCPILEGV AGEASPCCDA ALPDPDRHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.93045200338189	bayes_pls_golite062009
DNA binding	2.76021735963177	bayes_pls_golite062009
nucleic acid binding	2.74030354422037	bayes_pls_golite062009
transcription factor activity	2.40971210693942	bayes_pls_golite062009
binding	2.02368770517087	bayes_pls_golite062009
transcription activator activity	0.653537232350623	bayes_pls_golite062009
protein binding	0.539362924655427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: