YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17546792
Organism:	Ralstonia solanacearum GMI1000
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17546792.

Description	E-value	Query Range	Subject Range
gi\|68555597, gi\|... - gi\|94309861\|ref\|YP_583071.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ralstonia metalli...	222.0	[0..1]	[288..1]
gi\|207742723, gi... - gi\|207742723\|ref\|YP_002259115.1\| cdp-diacylglycerol--serine o-phosphatidyltransferase protein [Ralst... gi\|83727037, gi\|... - gi\|83746287\|ref\|ZP_00943340.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ralstonia solan...	221.0	[0..1]	[291..1]
gi\|113867060, gi... - gi\|113867060\|ref\|YP_725549.1\| phosphatidylserine synthase [Ralstonia eutropha H16], gi\|113525836\|emb...	204.0	[0..1]	[283..1]
gi\|73540654, gi\|... - gi\|73540654\|ref\|YP_295174.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ralstonia eutroph...	203.0	[0..1]	[283..1]
gi\|67548313, gi\|... - gi\|67548313\|ref\|ZP_00426204.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia vi...	202.0	[0..1]	[280..1]
gi\|170136956, gi... - gi\|170698098\|ref\|ZP_02889178.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia a... gi\|72607607, gi\|... - gi\|74019589\|ref\|ZP_00690203.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia am... gi\|172061220, gi... - gi\|172061220\|ref\|YP_001808872.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia ...	202.0	[0..1]	[280..1]
gi\|90022183, gi\|... - gi\|90022183\|ref\|YP_528010.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Saccharophagus de...	202.0	[0..1]	[291..1]
gi\|91686555, gi\|... - gi\|91782601\|ref\|YP_557807.1\| CDP-diacylglycerol--serine O- phosphatidyltransferase [Burkholderia xen...	201.0	[0..1]	[281..1]
gi\|46311347, gi\|... - gi\|78067057\|ref\|YP_369826.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia sp. ...	200.0	[0..1]	[280..1]
gi\|67104588, gi\|... - gi\|67662003\|ref\|ZP_00459294.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia ce... gi\|67094210, gi\|... - gi\|67658075\|ref\|ZP_00455449.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia ce... gi\|194558632, gi... - gi\|254247647\|ref\|ZP_04940968.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia c... gi\|169816862, gi... - gi\|170733620\|ref\|YP_001765567.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Burkholderia ...	199.0	[0..1]	[280..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAFNRRKKR FTASNVMHLR PLRHNQPRSD DDELEVVRPR RRGIYLLPNA FTTAALFAGF  60
   61 FAIVQAMNLN FETAAIAIFA AMVLDGMDGR VARITNTQSA FGEQYDSLSD MCSFGVAPAL 120
  121 VMYEWILRDL GKWGWLAAFV YCAGAALRLA RFNTNIGVVD KRFFQGMPSP AAAALIAGFV 180
  181 WLAIDNKLPV KELWMPWVAF GLTLYAGLSM VSNAPFYSG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.677781
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KALDVRHRVP FGVMVLVLVL FVVVSSDPPV ALFGLFVVYA VSGYVLWGWR ALHGRPGSPR  60
   61 LPREPVPADA DE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits