YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2257547, gi\|1...
Organism:	Schizosaccharomyces pombe
Length:	726 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2257547, gi|1....

Description	E-value	Query Range	Subject Range
SFI1_SCHPO - Protein sfi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfi1 PE=3 SV=3 sfi1 - spindle pole body protein Sfi1	549.0	[0..1]	[726..115]
gi\|40746324, gi\|... - gi\|67516845\|ref\|XP_658308.1\| hypothetical protein AN0704.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	479.0	[0..31]	[706..298]
gi\|46438678, gi\|... - gi\|77022924\|ref\|XP_888906.1\| hypothetical protein CaO19_5163 [Candida albicans SC5314], gi\|68478098\|... gi\|76573719 - gi\|76573719\|dbj\|BAE44803.1\| hypothetical protein [Candida albicans]	456.0	[0..11]	[719..348]
gi\|42820775 - gi\|42820775\|emb\|CAD29603.2\| hypothetical protein [Aspergillus fumigatus] gi\|66850375, gi\|... - gi\|70995970\|ref\|XP_752740.1\| centrin-binding protein Sfi1 [Aspergillus fumigatus Af293], gi\|66850375...	456.0	[0..31]	[703..271]
gi\|28881131, gi\|... - gi\|32404436\|ref\|XP_322831.1\| predicted protein [Neurospora crassa], gi\|28917053\|gb\|EAA26776.1\| predi... gi\|85077361 - gi\|85077361\|ref\|XP_956012.1\| hypothetical protein NCU03573 [Neurospora crassa OR74A]	441.0	[0..42]	[711..449]
SFI1_YEAST - Protein SFI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFI1 PE=1 SV=1 SFI1 - Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the ...	424.0	[0..28]	[722..177]
gi\|44979999, gi\|... - gi\|45184653\|ref\|NP_982371.1\| AAL171Wp [Ashbya gossypii ATCC 10895], gi\|44979999\|gb\|AAS50195.1\| AAL17... gi\|44979999 - gi\|44979999\|gb\|AAS50195.1\| AAL171Wp [Ashbya gossypii ATCC 10895]	387.0	[0..27]	[722..193]
gi\|38105169, gi\|... - gi\|39942284\|ref\|XP_360679.1\| hypothetical protein MGG_03222 [Magnaporthe grisea 70-15], gb\|EAA51627....	384.0	[0..33]	[663..579]
gi\|220698180, gi... - gi\|238489109\|ref\|XP_002375792.1\| centrin-binding protein Sfi1, putative [Aspergillus flavus NRRL3357... gi\|169763224 - gi\|169763224\|ref\|XP_001727512.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770540 - gi\|83770540\|dbj\|BAE60673.1\| unnamed protein product [Aspergillus oryzae]	367.0	[0..31]	[703..300]
gi\|115492073, gi... - gi\|115492073\|ref\|XP_001210664.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	358.0	[0..31]	[720..298]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDPFIVNG DDYRSRSNQQ KSSQFASEVA QTIKSQTAMF RRADQYRSQK DKILLANSLD  60
   61 FMLEKYRYYK KIDAVYLRKA DAVYRAFIML KYFPRWVQKL RNIQSRIYSA GEAYRLILIG 120
  121 QMVNRWRQKT RERLHQKLRF QKNAFLLDVL LKWSALTVNW NRKHEYMLKR RVFTNWMSKR 180
  181 RRNESLIQKA NVFFQHSVLA HSFKTWKANL SIKNAATLYE KKVVFMSFNR WHANYESHVL 240
  241 DLQKAELFSQ KAYYSIALHK WKLRIEELSD LMNKADDLYE VNLLQRMLVL WRRKATTYEK 300
  301 IDFWMDGHDV DIVKSAFFKW KNKFIKVDRN FELADTILQN TFLTKWRLAV RVKVVQEKRN 360
  361 KDRLIVTFRF WYYLMKAKSF QH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	2dfsA
Description:	No description for 2dfsA was found.

Predicted Domain #2

Region A:
Residues: [383-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRDHRLLTIA WEAWKDNYQR RIKLQKEAQE LQLTRIQKIA KQYLIKWRIS LLDIKELSIR  60
   61 AEKLHTTNEI IGVWNQWVVS YNRKVGMQQN ADLFFKRKTL RVVFEHWRYL RETNMLLRLE 120
  121 NKVVDFREVQ SEKLVLRCWN AWV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.742	a.133.1	Phospholipase A2, PLA2
View	Download	0.747	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.671	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.753	a.7.6	Ribosomal protein S20
View	Download	0.801	d.58.26	GHMP Kinase, C-terminal domain

Predicted Domain #3

Region A:
Residues: [526-726]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARLLSVSQML DTAELSTQKV VVRAYEAWSF RYNHQKEIMS QADQFYNERL MRSAMVFWRY  60
   61 QLRAIKFYFN ISDWKRREFN RQTLRNAFDA WHLLMFRVTS LVMQADRFHE QKKNKLLGKY 120
  121 FRKWLQRMQL NQEESSLLEA EATIEGNRTS RYMHTFDTTL PMQNDEFTDE SVNFENRWKQ 180
  181 ELKTPISRFS KFLRPIPPNT R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits