YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2257540, gi\|1...
Organism:	Schizosaccharomyces pombe
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2257540, gi|1....

Description	E-value	Query Range	Subject Range
SHQ1_SCHPO - Protein shq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shq1 PE=3 SV=1 SPBC8D2.13 - SHQ1 family protein	590.0	[0..1]	[405..47]
SHQ1 - SHQ1 homolog (S. cerevisiae)	524.0	[0..1]	[375..47]
gi\|114587873 - gi\|114587873\|ref\|XP_001141951.1\| PREDICTED: SHQ1 homolog isoform 2 [Pan troglodytes]	521.0	[0..1]	[375..47]
gi\|109472406 - gi\|109472406\|ref\|XP_232222.4\| PREDICTED: similar to SHQ1 homolog [Rattus norvegicus]	510.0	[0..1]	[400..47]
gi\|109036672 - gi\|109036672\|ref\|XP_001082636.1\| PREDICTED: similar to SHQ1 homolog isoform 2 [Macaca mulatta]	504.0	[0..1]	[375..47]
orf19.5206, orf1... - orf19.5206 CGDID:CAL0003486 Assembly 19, Contig19-10221 (6005, 4476) CDS, reverse complemented, tran... gi\|68490515, gi\|... - gi\|68490546\|ref\|XP_710899.1\| hypothetical protein CaO19.12673 [Candida albicans SC5314], gi\|68490515...	499.0	[0..1]	[404..49]
gi\|187021732, gi... - gi\|39581414\|emb\|CAE74696.1\| Hypothetical protein CBG22510 [Caenorhabditis briggsae], gi\|187021732\|em... gi\|157759309 - gi\|157759309\|ref\|XP_001671998.1\| Hypothetical protein CBG22510 [Caenorhabditis briggsae AF16]	476.0	[0..1]	[401..250]
SHQ1_YEAST - Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1 gi\|207344374 - gi\|207344374\|gb\|EDZ71540.1\| YIL104Cp-like protein [Saccharomyces cerevisiae AWRI1631] SHQ1 - Chaperone protein required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing, f... gi\|190406315 - gi\|190406315\|gb\|EDV09582.1\| hypothetical protein SCRG_05276 [Saccharomyces cerevisiae RM11-1a]	476.0	[0..1]	[401..49]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLELPGNVL DDDRANASYD ISSGFVHIKF PKETPGEVFP DLDLLTTLLV NQNKEPVKKP  60
   61 LIEEVEDTPS PSTSQNASKD EEKEVKIDWQ NIHFDDPDFD WGLLQRLDDE KMQYTSTSQY 120
  121 GFNNQYSGLL KYNALVGNEI NQIPEPERTP PSTRSEIRVQ LEDEKFDAEH YMADFYDREM 180
  181 IDEILHYIPD YIGEFLLVQQ GKSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLLEFTSEEK EALAKLPKRS YLIDNPKNVY LCLVPLIFAY AYDNRTTLGD PTIESCWNIG  60
   61 TLSSTISCLD TNFLAIKDIF IACIRRSLAY PLYRNWDLAL TCWKDTHAIL SLGKRWILRV 120
  121 LLRIRNLFEH HDVYYIYNAI VLNDYAYWIQ TANDNVLAAL AYQVSECTIT KEETNWPLEE 180
  181 IEANVQETII ASDEESESIE K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	125.275724
Match:	PF04925.6
Description:	No description for PF04925.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits