YRC Public Data Repository - Protein Structure Prediction

Protein:	APG_ORYSJ
Organism:	Oryza sativa Japonica Group
Length:	505 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APG_ORYSJ.

Description	E-value	Query Range	Subject Range
gi\|46254717, gi\|... - gi\|46254717\|gb\|AAS86291.1\| myc-like anthocyanin regulatory protein [Cornus unalaschkensis], gi\|46254...	162.0	[0..2]	[403..103]
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	137.0	[0..9]	[505..27]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	132.0	[0..3]	[500..871]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	130.0	[0..5]	[505..1378]
gi\|109499192 - gi\|109499192\|ref\|XP_001063558.1\| PREDICTED: similar to dumpy CG33196-PB [Rattus norvegicus]	124.0	[0..7]	[503..68]
gi\|113416398 - gi\|113416398\|ref\|XP_001131587.1\| PREDICTED: similar to gamma-aminobutyric acid A receptor, epsilon ...	123.0	[0..5]	[504..85]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
   61 GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL PPDYCAALLS GLSDHLPPPA 120
  121 AAASRVDPDP CSSSHGAVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTSAAAAKQ ARTSGGGGGG VMNFTFFSRP LQQRPSGGET ASASASAAAT STVPVESTVV  60
   61 QAATNRLRST PLFSDQRMAW LHPPKPSPRA AAPPPPPPLA PTTRHRLDTA AATATVAQRL 120
  121 PPSEARAPDA PPPAATATAT TSSVCSGNGD RRQLNWRDSH NNQSAEWSAS QDELDLDDEL 180
  181 AGVHRRSAAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [330-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID KASMLEEAIE YLKTLQLQVQ  60
   61 MMSMGTGMFV PPMMLPAAAA AMQHHHMQMQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.154902
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [421-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA AQFPCPMFPA APPMSMFAPP PPPPPFPHAA  60
   61 ATAVEQTPSP PGAADAGNAP AVKQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits