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View Structure Prediction Details

Protein: METL1_ARATH
Organism: Arabidopsis thaliana
Length: 775 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for METL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7267694, gi|7... - pir||T04002 hypothetical protein T5L19.110 - Arabidopsis thaliana, gi|7267694|emb|CAB78121.1| putati...
506.0 [0..1] [775..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKQEESSL EKLSTWYQDG EQDGGDRSEK RRMSLKASDF ESSSRSGGSK SKEDNKSVVD  60
   61 VEHQDRDSKR ERDGRERTHG SSSDSSKRKR WDEAGGLVND GDHKSSKLSD SRHDSGGERV 120
  121 SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS 180
  181 NRSKTPDADY EKEKYSRKDE RSRGRDDGW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDRDRDQEGL KDNWKRRHSS SGDKDQKDGD LLYDRGRERE FPRQGRERSE GERSHGRLGG  60
   61 RKDGNRGEAV KALSSGGVSN ENYDVIEIQT KPHDYVRGES GPNFARMTES GQQPPKKPSN 120
  121 NEEEWAHNQE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [340-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRQRSETFGF GSYGEDSRDE AGEASSDYSG AKARNQRGST PGRTNFVQTP NRGYQTPQGT  60
   61 RGNRPLRGGK GRPAGGRENQ QGAIPMPIMG SPFANLGMPP PSPIHSLTPG MSPIPGTSVT 120
  121 PVFMPPFAPT LIWPGARGVD GNMLPVPPVL SPLPPGPSGP RFPSIGTPPN PNMFFTPPGS 180
  181 DRGGPPNFPG SNISGQMGRG MPSDKTSGGW VPPRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [555-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPPGKAPSR GEQNDYSQNF VDTGMRPQNF IRELELTNVE DYPKLRELIQ KKDEIVSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [613-775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASAPMYLKG DLHEVELSPE LFGTKFDVIL VDPPWEEYVH RAPGVSDSME YWTFEDIINL  60
   61 KIEAIADTPS FLFLWVGDGV GLEQGRQCLK KWGFRRCEDI CWVKTNKSNA APTLRHDSRT 120
  121 VFQRSKEHCL MGIKGTVRRS TDGHIIHANI DTDVIIAEEP PYG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.29
Match: 1g60A
Description: Methyltransferase mboII
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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