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View Structure Prediction Details

Protein: METL1_ARATH
Organism: Arabidopsis thaliana
Length: 775 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for METL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7267694, gi|7... - pir||T04002 hypothetical protein T5L19.110 - Arabidopsis thaliana, gi|7267694|emb|CAB78121.1| putati...
506.0 [0..1] [775..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKQEESSL EKLSTWYQDG EQDGGDRSEK RRMSLKASDF ESSSRSGGSK SKEDNKSVVD  60
   61 VEHQDRDSKR ERDGRERTHG SSSDSSKRKR WDEAGGLVND GDHKSSKLSD SRHDSGGERV 120
  121 SVSNEHGESR RDLKSDRSLK TSSRDEKSKS RGVKDDDRGS PLKKTSGKDG SEVVREVGRS 180
  181 NRSKTPDADY EKEKYSRKDE RSRGRDDGW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDRDRDQEGL KDNWKRRHSS SGDKDQKDGD LLYDRGRERE FPRQGRERSE GERSHGRLGG  60
   61 RKDGNRGEAV KALSSGGVSN ENYDVIEIQT KPHDYVRGES GPNFARMTES GQQPPKKPSN 120
  121 NEEEWAHNQE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [340-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRQRSETFGF GSYGEDSRDE AGEASSDYSG AKARNQRGST PGRTNFVQTP NRGYQTPQGT  60
   61 RGNRPLRGGK GRPAGGRENQ QGAIPMPIMG SPFANLGMPP PSPIHSLTPG MSPIPGTSVT 120
  121 PVFMPPFAPT LIWPGARGVD GNMLPVPPVL SPLPPGPSGP RFPSIGTPPN PNMFFTPPGS 180
  181 DRGGPPNFPG SNISGQMGRG MPSDKTSGGW VPPRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [555-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPPGKAPSR GEQNDYSQNF VDTGMRPQNF IRELELTNVE DYPKLRELIQ KKDEIVSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [613-775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASAPMYLKG DLHEVELSPE LFGTKFDVIL VDPPWEEYVH RAPGVSDSME YWTFEDIINL  60
   61 KIEAIADTPS FLFLWVGDGV GLEQGRQCLK KWGFRRCEDI CWVKTNKSNA APTLRHDSRT 120
  121 VFQRSKEHCL MGIKGTVRRS TDGHIIHANI DTDVIIAEEP PYG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.29
Match: 1g60A
Description: Methyltransferase mboII
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle