YRC Public Data Repository - Protein Structure Prediction

Protein:	THIO_PIG
Organism:	Sus scrofa
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THIO_PIG.

Description	E-value	Query Range	Subject Range
gi\|114626146 - gi\|114626146\|ref\|XP_001142154.1\| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surfa...	147.0	[0..1]	[105..219]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	139.0	[0..2]	[105..43]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	137.0	[0..2]	[105..43]
gi\|53801490 - gi\|53801490\|gb\|AAU93947.1\| thioredoxin H [Helicosporidium sp. ex Simulium jonesii]	137.0	[0..2]	[104..5]
gi\|73971948 - gi\|73971948\|ref\|XP_532029.2\| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surface a...	136.0	[0..11]	[105..125]
gi\|49076440, gi\|... - gi\|71020991\|ref\|XP_760726.1\| hypothetical protein UM04579.1 [Ustilago maydis 521], ref\|XP_402194.1\| ...	135.0	[0..1]	[104..1]
gi\|24158968 - gi\|24158968\|pdb\|1M7T\|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thiore...	135.0	[0..1]	[105..1]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	134.0	[0..1]	[105..112]
gi\|67473772, gi\|... - gi\|67473772\|ref\|XP_652635.1\| thioredoxin [Entamoeba histolytica HM-1:IMSS], gi\|56469506\|gb\|EAL47249....	134.0	[0..2]	[100..3]
gi\|157830999, gi... - gi\|1827675\|pdb\|1ERV\| Chain , Human Thioredoxin Mutant With Cys 73 Replaced By Ser (Reduced Form), ...	134.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKQIESKYA FQEALNSAGE KLVVVDFSAT WCGPCKMIKP FFHSLSEKYS NVVFLEVDVD  60
   61 DCQDVASECE VKCMPTFQFF KKGQKVGEFS GANKEKLEAT INELI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1ervA
Description:	HUMAN THIOREDOXIN MUTANT WITH CYS 73 REPLACED BY SER (REDUCED FORM)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits