YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUAD_BOVIN
Organism:	Bos taurus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUAD_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|12005918, gi\|... - gi\|21361822\|ref\|NP_057049.3\| cell death-regulatory protein GRIM19 [Homo sapiens], gi\|12005918\|gb\|AAG...	239.0	[0..1]	[144..84]
gi\|111662445 - gi\|111662445\|gb\|ABH12254.1\| mitochondrial complex I subunit Grim19 [Gorilla gorilla] NDUAD_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 ...	233.0	[0..1]	[144..1]
NDUAD_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2...	231.0	[0..1]	[144..20]
NDUAD_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=...	230.0	[0..1]	[143..1]
gi\|57101296 - gi\|57101296\|ref\|XP_533863.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase B16.6 subunit (Com...	227.0	[0..1]	[144..1]
NDUAD_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3 NDUAD_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo abelii GN=NDUFA13 PE=2 SV=3	226.0	[0..1]	[143..1]
NDUAD_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3	226.0	[0..1]	[144..1]
gi\|125948123, gi... - gi\|51873811\|gb\|AAH78619.1\| Ndufa13 protein [Xenopus laevis], gi\|148229783\|ref\|NP_001087363.1\| mitoch...	226.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASKVKQDM PPVGGYGPID YKRNLPRRGL SGYSMFAVGI GALLFGYWSM MKWNRERRRL  60
   61 QIEDFEARIA LMPLLQAEKD RRVLQMLREN LEEEATVMKD VPGWKVGESV FHTTRWVTPM 120
  121 MGELYGLRAS EEVLSATYGF IWYT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.522879
Match:	PF06212.3
Description:	No description for PF06212.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits