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View Structure Prediction Details

Protein: gi|215715298, gi...
Organism: Oryza sativa Japonica Group
Length: 731 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215715298, gi....

Description E-value Query
Range
Subject
Range
gi|32813435 - gi|32813435|dbj|BAC77269.2| SCARECROW-like protein [Lilium longiflorum]
813.0 [0..20] [730..9]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDNNFGEL SGMFCGLSYD GYTDHGSQSD YFRFADPQPA IVPQMDAGPS SAASSTASRA  60
   61 AVSSGTDNPE DWEFISDESL NYISRMLMEE DIDEKVSMYQ EESAALRAAA KPFYDILGHK 120
  121 FPPSPDRQLV AWPLDSPSES STSSYPHSLA SSVTSSNISG AVDSSQRRYV GHSEYRSLSG 180
  181 HSSQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVGPSSDVRN AMETLEDPLI SNGRIPEYLF ESFPTWDFRR GVDEAQKFLP GSDKVVIDLE  60
   61 AGGVAKRQEA GKAISLNVSK AEVLKVKKNR QSEDLDVMEG RNSKQSAFCS DEPDWIEMFD 120
  121 VLLRQTEKKA TDLRKMMRFE ASKNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [331-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVAQPKGPSG TRSRGRKPTK KDVVDLRTLL IHCAQAVAAD DRRTANELLK QIRQHAKPNG  60
   61 DGSQRLAYCF ADGLEARLAG TGSQLYHKLV AKRTTASDML KAYHLYLAAC 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [441-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFKRLSHFLS NQTILSLTKN ASKVHIIDFG IYFGFQWPCL IRRLFKREGG PPKLRITGID  60
   61 VPQPGFRPTE RIEETGQRLA EYAEKIGVPF EYQGIASKWE TICVEDLNIK KDEVVIVNCL 120
  121 YRFRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [566-731]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIDETVAIDS PRNRVLNTIR QVNPAIFIHG IVNGSYSVPF FITRFREALF HFSALFDMLE  60
   61 TTVPRDDAQR ALIERDLFGR EALNVIACEG SDRVERPETY KQWQVRNLRA GFVQSPLNQD 120
  121 IVLKAKDKVK DIYHKDFVID EDSEWLLQGW KGRIIYAIST WKPNNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle