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View Structure Prediction Details

Protein: GRF1_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRF1_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|6573149 - gi|6573149|gb|AAF17567.1|AF201895_1 growth-regulating factor 1 [Oryza sativa]
GRF1_ORYSI - Growth-regulating factor 1 OS=Oryza sativa subsp. indica GN=GRF1 PE=2 SV=1
447.0 [0..1] [397..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA  60
   61 LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120
  121 MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSAGVAPT TTTTSSPAPS YSRPAPH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAAPYQALYG GPYAAATART PAAAAYHAQV SPFHLQLDTT HPHPPPSYYS MDHKEYAYGH  60
   61 ATKEVHGEHA FFSDGTEREH HHAAAGHGQW QFKQLGMEPK QSTT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [282-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLFPGAGYGH TAASPYAIDL SKEDDDEKER RQQQQQQQQQ HCFLLGADLR LEKPAGHDHA  60
   61 AAAQKPLRHF FDEWPHEKNS KGSWMGLEGE TQLSMSIPMA ANDLPITTTS RYHNDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle