YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494188
Organism:	Plasmodium falciparum
Length:	783 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494188.

Description	E-value	Query Range	Subject Range
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	426.0	[0..97]	[780..24]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	422.0	[0..157]	[783..89]
gi\|76802633, gi\|... - gi\|76802633\|ref\|YP_330728.1\| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis D...	422.0	[0..235]	[780..179]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	420.0	[0..233]	[780..163]
gi\|70606628, gi\|... - gi\|70606628\|ref\|YP_255498.1\| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639], gi\|68567...	409.0	[0..233]	[782..160]
VAT_THEAC - VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / ... VAT_THEAC - VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1	408.0	[0..62]	[780..2]
gi\|10580970, gi\|... - pir\|\|D84301 cell division cycle protein [imported] - Halobacterium sp. NRC-1, gi\|15790472\|ref\|NP_280... gi\|169236208, gi... - gi\|169236208\|ref\|YP_001689408.1\| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salina...	407.0	[0..239]	[780..183]
gi\|48477528, gi\|... - gi\|48477528\|ref\|YP_023234.1\| cell division cycle protein 48 [Picrophilus torridus DSM 9790], gi\|4843...	407.0	[0..70]	[780..9]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	407.0	[0..233]	[782..193]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTNLQCCKL QSQELALTNC GFINIGLYNN LKKSVKSNDV YSEVGNMVLI LRGDGNIGRE  60
   61 EIALNTCQRE FSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1qdnA
Description:	N-terminal domain of NSF-N, NSF-Nn; C-terminal domain of NSF-N, NSF-Nc
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.48465650907586	bayes_pls_golite062009
catalytic activity	1.17990683373825	bayes_pls_golite062009
protein binding	0.427072061012472	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [74-783]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQLKELVEIN ILDKENKNDL VNFIPIDSIE LEVNLFVKPD RLIEMEDEKL EDVFKKYFLN  60
   61 HILTKGQILA LKYNDILLKC IVKDLKTADF DEIKRLNNSN NNNNNRNSSG FSGYFNKWSP 120
  121 GFNNADNQNL SYNRYERGIL FENTECIFTS ISDGGKLCIE SKKVLKQNII KNNFNFEELG 180
  181 IGALDEEFKT IFRRTFASRI YPNYIIKQLS IKHVKGMILY GPPGTGKTLI ARQIGKTLNA 240
  241 REPKIINGPE ILNKYVGQSE ENIRNLFKDA EMEYKQSGEN SLLHIIILDE IDAICRQRGN 300
  301 VGSSSTGVND SVVNQLLSKI DGVNSLNNIL LIGMTNRIDL IDEALLRPGR FELHIEISLP 360
  361 NKEGRIQILN IHTKNMRMSN KLSSDVNILE LAERTPNFSG AEIEGLVRNT VSYAFERHIN 420
  421 FNDLTKPINA DDIMITKNDF MKALKETKPA FGAEEDIIGN LLCNGIINYG KEYENIENTC 480
  481 KLLIKQIVDN ENTKLMSILL YGENGSGKTT ISAYIAKCAN FHFTKFITPE NLIGYSEIGR 540
  541 INYINKIFED AYKTPLSLVI LDNIERLIDY TRIGPRFSNS ILQAIMVLIK KKPKKENQKI 600
  601 LIICTTSEYQ FMKDVGLTKN FFVNIHVPLL STSSSIKNVL QHRNQTYHDF PNNEIEKVIS 660
  661 SNIIKNIAIK NLLMIIDMAS EASDDKNITS DVFLKIFNDC GLLLDDDTDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: