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View Structure Prediction Details

Protein: gi|42561929, gi|...
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42561929, gi|....

Description E-value Query
Range
Subject
Range
gi|25402690, gi|... - gi|3157950|gb|AAC17633.1| Contains similarity to hypothetical protein C18b11.05 gb|Z50728 from S. po...
325.0 [0..1] [489..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKALESNSK SRKETILIKY AIFSRLLVLF LTILWRSLLQ PYDTSAALNP PCLYHKEDSF  60
   61 PFLVANAASR SLENSVVWDS VYFLRITECG YE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEQTYAFLPL LPFFISLLSR TVFAPLVPLI GLRAVMVLSG FTVSNLAFIF AAIYLFRVSV  60
   61 IILKDTEASF RASIIFCFNP ASIFYSSIYS ESLYALFSIG GVYHLLSGTS NVGVLWFALS 120
  121 GCARSNGILN AGYICFQTMH RAYEALYQKR RAYLAMQVFI AGFLRCICIC LPFVAFQAYG 180
  181 YYNICHGHTR DEVRPWCKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPLLYNFIQ SHYWGVGFLK YFQFKQLPNF LLASPILSLA VCSIMSYMKS RPELFISLGF  60
   61 QATEKEKRSA ARLYSLKDAV EPSVKTSTNE GNHDIRQRKP SSKKDVTGTK VAPEKSGYLS 120
  121 ADVFPFIVHL SFMVTTAFFI MHVQVATRFL SASPPLYWFA SSLIGSPKHS KWGYLIWSYC 180
  181 AAYILLGTLL FSNFYPFT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle