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View Structure Prediction Details

Protein: gi|42561929, gi|...
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42561929, gi|....

Description E-value Query
Range
Subject
Range
gi|25402690, gi|... - gi|3157950|gb|AAC17633.1| Contains similarity to hypothetical protein C18b11.05 gb|Z50728 from S. po...
325.0 [0..1] [489..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKALESNSK SRKETILIKY AIFSRLLVLF LTILWRSLLQ PYDTSAALNP PCLYHKEDSF  60
   61 PFLVANAASR SLENSVVWDS VYFLRITECG YE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEQTYAFLPL LPFFISLLSR TVFAPLVPLI GLRAVMVLSG FTVSNLAFIF AAIYLFRVSV  60
   61 IILKDTEASF RASIIFCFNP ASIFYSSIYS ESLYALFSIG GVYHLLSGTS NVGVLWFALS 120
  121 GCARSNGILN AGYICFQTMH RAYEALYQKR RAYLAMQVFI AGFLRCICIC LPFVAFQAYG 180
  181 YYNICHGHTR DEVRPWCKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPLLYNFIQ SHYWGVGFLK YFQFKQLPNF LLASPILSLA VCSIMSYMKS RPELFISLGF  60
   61 QATEKEKRSA ARLYSLKDAV EPSVKTSTNE GNHDIRQRKP SSKKDVTGTK VAPEKSGYLS 120
  121 ADVFPFIVHL SFMVTTAFFI MHVQVATRFL SASPPLYWFA SSLIGSPKHS KWGYLIWSYC 180
  181 AAYILLGTLL FSNFYPFT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle