YRC Public Data Repository - Protein Structure Prediction

Protein:	MTPC1_ARATH
Organism:	Arabidopsis thaliana
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTPC1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|30690804 - gi\|30690804\|ref\|NP_850480.1\| cation efflux family protein / metal tolerance protein, putative (MTPc1...	311.0	[0..1]	[471..1]
gi\|76611372 - gi\|76611372\|ref\|XP_588317.2\| PREDICTED: similar to PP12488 [Bos taurus]	261.0	[0..11]	[377..250]
gi\|117610185, gi... - gi\|69261683\|ref\|ZP_00608503.1\| Cation efflux protein [Magnetococcus sp. MC-1], gi\|68244946\|gb\|EAN270...	249.0	[0..57]	[471..1]
ZNT2_MOUSE - Zinc transporter 2 OS=Mus musculus GN=Slc30a2 PE=2 SV=1	248.0	[0..3]	[378..4]
gi\|108999678 - gi\|108999678\|ref\|XP_001108252.1\| PREDICTED: similar to solute carrier family 30, member 2 isoform 1 ...	247.0	[0..11]	[378..15]
gi\|114554828 - gi\|114554828\|ref\|XP_524624.2\| PREDICTED: solute carrier family 30, member 2 isoform 2 [Pan troglodyt...	246.0	[0..13]	[378..17]
gi\|33341748, gi\|... - gi\|55959547\|emb\|CAI17131.1\| solute carrier family 30 (zinc transporter), member 2 [Homo sapiens], gi...	246.0	[0..13]	[378..17]
gi\|83647647, gi\|... - gi\|83647647\|ref\|YP_436082.1\| Co/Zn/Cd cation transporter [Hahella chejuensis KCTC 2396], gi\|83635690...	245.0	[0..66]	[469..6]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIIRFQILN PTRICRSTIY YMSCRYLPSS SSSSSPLRVS SSSSQKPSFD FSRRWHFGHP  60
   61 DHHQQYQKPG EEGEKIFRLG LTADIGLSVA KALTGYLCGS TAIIADAAHS VSDVVLSGVA 120
  121 LVSYRAANVP KDKEHPYGHG KFETLGALGI SAMLLATGSG IAWHALDLLS IALSAAPEVI 180
  181 HSGHHHGIDM NHPILALTVT IASISIKEGL YWITKRAGEK QGSGLMMANA WHHRSDAISS 240
  241 LVALVGVGGS ILGVNFLDPL AGLVVSTMIV NAGLKTGHQS ILELVDAAIP AQQLEPIRQT 300
  301 ILQVEGVKGC HRLRGRRAGS SLYLDVHIVV DPFSSVSVAH EVGEYVRRQI NLNHPEVSEV 360
  361 FIHIDPAFLQ FSCSTKDHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted Domain #2

Region A:
Residues: [380-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SITKESNICQ EIKHVEATVS DIFSSQLSEK LTIKRITPHL LHSKILLQIV VAMPSTMSIQ  60
   61 DVMIAAEHAE KEILKAAPNV ARVSIQLSLN SE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.888	a.7.14	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits