YRC Public Data Repository - Protein Structure Prediction

Protein:	HCAR_ARATH
Organism:	Arabidopsis thaliana
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCAR_ARATH.

Description	E-value	Query Range	Subject Range
gi\|22299388, gi\|... - gi\|22299388\|ref\|NP_682635.1\| hypothetical protein tll1845 [Thermosynechococcus elongatus BP-1], gi\|2...	418.0	[0..44]	[454..7]
gi\|56750204, gi\|... - gi\|56750204\|ref\|YP_170905.1\| hypothetical protein syc0195_d [Synechococcus elongatus PCC 6301], gi\|5... gi\|46129830, gi\|... - gi\|81300168\|ref\|YP_400376.1\| coenzyme F420 hydrogenase [Synechococcus elongatus PCC 7942], gi\|811690...	416.0	[0..43]	[457..6]
gi\|186685427, gi... - gi\|23127905\|ref\|ZP_00109764.1\| COG1035: Coenzyme F420-reducing hydrogenase, beta subunit [Nostoc pun...	415.0	[0..43]	[452..6]
gi\|67921512, gi\|... - gi\|67921512\|ref\|ZP_00515030.1\| Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal:Coen...	412.0	[0..40]	[454..9]
gi\|75910412, gi\|... - gi\|75910412\|ref\|YP_324708.1\| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like [Anabaena var...	412.0	[0..43]	[452..6]
Y1601_NOSS1 - Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all1601 PE=4 SV=2 gi\|25530610 - pir\|\|AC2006 hypothetical protein all1601 [imported] - Nostoc sp. (strain PCC 7120)	409.0	[0..43]	[452..6]
gi\|48892959, gi\|... - gi\|71676614\|ref\|ZP_00674355.1\| Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal:Coen...	409.0	[0..43]	[453..10]
gi\|86608737 - gi\|86608737\|ref\|YP_477499.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Cyanobacteria b... gi\|86557279, gi\|... - gi\|86608737\|ref\|YP_477499.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Synechococcus s...	407.0	[0..39]	[452..1]
gi\|86554441, gi\|... - gi\|86605899\|ref\|YP_474662.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Cyanobacteria b... gi\|86554441, gi\|... - gi\|86605899\|ref\|YP_474662.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Synechococcus s...	406.0	[0..39]	[452..1]
gi\|7469578 - pir\|\|S76445 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi\|16331168, gi\|... - gi\|1653662\|dbj\|BAA18574.1\| slr1923 [Synechocystis sp. PCC 6803], gi\|16331168\|ref\|NP_441896.1\| hypoth...	401.0	[0..40]	[454..3]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVVTSRLS LLPPVFSVVN SSSSRSKDMN LEPKKKVKLR EDWREKSRPI PPGGTYPAKD  60
   61 HCSQCGLCDT YYIAHVKEAC AFLGDGMSRI ESLEPVVHGR GRKADSLQDT YFGVHQEQLY 120
  121 ARKLKPVEGA QWTGIVTTIA IEMLKSNMVE AVVCVQSDPE DRLSPRPVLA RTPEEVLAAR 180
  181 GVKPTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.221849
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [187-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNLNTLELI EASGVKRLLF CGVGCQVQAL RSVEQHLNLE KLYVLGTNCV DNGTRDGLDK  60
   61 FLKAASKEPE TVLHYEFMQD YKVQLKHLDG HIEEVPYFSL PANDLVDVIA PSCYSCFDYT 120
  121 NALADLVIGY MGVPKYSGLN MTDHPQYITV RNERGKEMLS LVENLLEITP TISSGDRRPF 180
  181 VTETVKADDA AKFGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.49485
Match:	PF04432.4
Description:	No description for PF04432.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [382-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPAQPAPLFV GNIIAFILNL VGPKGLEFAR YSLDYHTIRN YLYVNRKWGK QRANTHMPSY  60
   61 AKKIVEMYNK NGQIDKMLSK K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.942	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits