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View Structure Prediction Details

Protein: gi|23308179, gi|...
Organism: Arabidopsis thaliana
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23308179, gi|....

Description E-value Query
Range
Subject
Range
gi|151942810 - gi|151942810|gb|EDN61156.1| amino acid transporter [Saccharomyces cerevisiae YJM789]
AGC1 - Mitochondrial amino acid transporter, acts both as a glutamate uniporter and as an aspartate-glutama...
AGC1_YEAST - Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...
287.0 [0..34] [340..529]

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Predicted Domain #1
Region A:
Residues: [1-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGALMEEK RRATTSSSSS QVHMSNDIDW QMLDKSRFFF LGAALFSGVS TALYPIVVLK  60
   61 TRQQVSPTRV SCANISLAIA RLEGLKGFYK GFGTSLLGTI PARALYMTAL EITKSSVGQA 120
  121 TVRLGLSDTT SLAVANGAAG LTSAVAAQTV WTPIDIVSQG LMVQGDVSLS KHLPGVMNSC 180
  181 RYRNGFDAFR KILYTDGPRG FYRGFGISIL TYAPSNAVWW ASYSLAQKSI WSRYKHSYNH 240
  241 KEDAGGSVVV QALSAATASG CSALVTMPVD TIKTRLQVLD AEENGRRRAM TVMQSVKSLM 300
  301 KEGGVGACYR GLGPRWVSMS MSATTMITTY EFLKRLATKK QK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.221849
Match: 1okcA
Description: structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle