| Protein: | TYDP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 605 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYDP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
767.0 | [0..1] | [605..1] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS 60
61 ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL IPGHHFFKLV LLNGRAAKKA 120
121 RKAEDDVE
|
| Detection Method: |  |
| Confidence: | 3.24 |
| Match: | 1yj5C |
| Description: | Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.798082397599655 | bayes_pls_golite062009 |
| protein binding | 0.37317243448195 | bayes_pls_golite062009 |
|
Region A: Residues: [129-605] |
1 11 21 31 41 51
| | | | | |
1 AIRRFCPPNE KLPSTFRLLS VDALPDWANT SCVSINDVIE GDVVAAILSN YMVDIDWLMS 60
61 ACPKLANIPQ VMVIHGEGDG RQEYIQRKKP ANWILHKPRL PISFGTHHSK AIFLVYPRGV 120
121 RVVVHTANLI HVDWNNKSQG LWMQDFPWKD DDKDPPKGCG FEGDLIDYLN VLKWPEFTAN 180
181 LPGRGNVKIN AAFFKKFDYS DATVRLIASV PGYHTGFNLN KWGHMKLRTI LQECIFDREF 240
241 RRSPLIYQFS SLGSLDEKWL AEFGNSLSSG ITEDKTPLGP GDSLIIWPTV EDVRCSLEGY 300
301 AAGNAIPSPL KNVEKPFLKK YWARWKADHS ARGRAMPHIK TFTRYNDQKI AWFLLTSSNL 360
361 SKAAWGALQK NNSQLMIRSY ELGVLFLPSP IKTQGCVFSC TESNPSVMKA KQETKDEVEK 420
421 RSKLVTMTWQ GDRDLPEIIS LPVPYQLPPK PYSPEDVPWS WDRGYSKKDV YGQVWPR
|
| Detection Method: | |
| Confidence: | 159.0 |
| Match: | 1qzqA |
| Description: | human Tyrosyl DNA phosphodiesterase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.762303478549781 | bayes_pls_golite062009 |
