YRC Public Data Repository - Protein Structure Prediction

Protein:	SCO12_ARATH
Organism:	Arabidopsis thaliana
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCO12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28926370, gi\|... - gi\|38567240\|emb\|CAE76531.1\| probable SCO1 protein precursor [Neurospora crassa], gi\|32420339\|ref\|XP_... gi\|85113776 - gi\|85113776\|ref\|XP_964583.1\| hypothetical protein [Neurospora crassa OR74A]	188.0	[0..1]	[275..5]
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	177.0	[0..109]	[275..1]
gi\|116068112, gi... - gi\|116074890\|ref\|ZP_01472151.1\| thioredoxin peroxidase [Synechococcus sp. RS9916], gi\|116068112\|gb\|E...	175.0	[0..104]	[275..1]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	175.0	[0..104]	[275..1]
gi\|86167507, gi\|... - gi\|87124628\|ref\|ZP_01080476.1\| thioredoxin peroxidase [Synechococcus sp. RS9917], gi\|86167507\|gb\|EAQ...	174.0	[0..104]	[275..1]
gi\|3080443, gi\|7... - pir\|\|T05011 hypothetical protein T19P19.130 - Arabidopsis thaliana, gi\|7270958\|emb\|CAB80637.1\| putat...	174.0	[0..10]	[276..177]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	174.0	[0..110]	[275..7]
PRDX_ASCSU - Peroxiredoxin OS=Ascaris suum PE=2 SV=1	173.0	[0..112]	[275..6]
gi\|78197313, gi\|... - gi\|78212854\|ref\|YP_381633.1\| thioredoxin peroxidase [Synechococcus sp. CC9605], gi\|78197313\|gb\|ABB35...	172.0	[0..110]	[275..7]
gi\|17232133, gi\|... - gi\|17232133\|ref\|NP_488681.1\| peroxiredoxin [Nostoc sp. PCC 7120], gi\|17133778\|dbj\|BAB76340.1\| peroxi... gi\|75701970, gi\|... - gi\|75908245\|ref\|YP_322541.1\| Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen... gi\|25285298 - pir\|\|AI2385 peroxiredoxin [imported] - Nostoc sp. (strain PCC 7120)	172.0	[0..101]	[275..2]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCRRLVLS CKNQAASFLR RCGPSKRIQS VNYCKSTRQG HEIPDVKPLF PTGGGTQAPS  60
   61 RSRARYAVPA ILLGFAGFVG FLHYNDERRA VPRGQASSNS GCGCGSNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVKGPIIGGP FTLVSTENKI VTENDFCGKW VLLYFGYSFS PDVGPEQLKM MSKAVDKLES  60
   61 KHNEKILPVF VTLDPQRDTP SHLHAYLKEF DSRILGLTGT ASAMRQMAQE YRVYFKKVQE 120
  121 DGEDYLVDTS HNMYLINPKM EIVRCFGVEY NPDELSQELL KEVASVSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1wp0A
Description:	Human SCO1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits