YRC Public Data Repository - Protein Structure Prediction

Protein:	SCO12_ARATH
Organism:	Arabidopsis thaliana
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCO12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28926370, gi\|... - gi\|38567240\|emb\|CAE76531.1\| probable SCO1 protein precursor [Neurospora crassa], gi\|32420339\|ref\|XP_... gi\|85113776 - gi\|85113776\|ref\|XP_964583.1\| hypothetical protein [Neurospora crassa OR74A]	188.0	[0..1]	[275..5]
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	177.0	[0..109]	[275..1]
gi\|116068112, gi... - gi\|116074890\|ref\|ZP_01472151.1\| thioredoxin peroxidase [Synechococcus sp. RS9916], gi\|116068112\|gb\|E...	175.0	[0..104]	[275..1]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	175.0	[0..104]	[275..1]
gi\|86167507, gi\|... - gi\|87124628\|ref\|ZP_01080476.1\| thioredoxin peroxidase [Synechococcus sp. RS9917], gi\|86167507\|gb\|EAQ...	174.0	[0..104]	[275..1]
gi\|3080443, gi\|7... - pir\|\|T05011 hypothetical protein T19P19.130 - Arabidopsis thaliana, gi\|7270958\|emb\|CAB80637.1\| putat...	174.0	[0..10]	[276..177]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	174.0	[0..110]	[275..7]
PRDX_ASCSU - Peroxiredoxin OS=Ascaris suum PE=2 SV=1	173.0	[0..112]	[275..6]
gi\|78197313, gi\|... - gi\|78212854\|ref\|YP_381633.1\| thioredoxin peroxidase [Synechococcus sp. CC9605], gi\|78197313\|gb\|ABB35...	172.0	[0..110]	[275..7]
gi\|17232133, gi\|... - gi\|17232133\|ref\|NP_488681.1\| peroxiredoxin [Nostoc sp. PCC 7120], gi\|17133778\|dbj\|BAB76340.1\| peroxi... gi\|75701970, gi\|... - gi\|75908245\|ref\|YP_322541.1\| Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen... gi\|25285298 - pir\|\|AI2385 peroxiredoxin [imported] - Nostoc sp. (strain PCC 7120)	172.0	[0..101]	[275..2]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCRRLVLS CKNQAASFLR RCGPSKRIQS VNYCKSTRQG HEIPDVKPLF PTGGGTQAPS  60
   61 RSRARYAVPA ILLGFAGFVG FLHYNDERRA VPRGQASSNS GCGCGSNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.402	a.204.1	Description not found.
View	Download	0.401	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.401	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.350	a.204.1	Description not found.
View	Download	0.289	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.282	a.204.1	Description not found.
View	Download	0.249	a.159.3	Description not found.
View	Download	0.222	a.24.17	Group V grass pollen allergen
View	Download	0.210	a.48.1	N-terminal domain of cbl (N-cbl)
View	Download	0.209	a.24.3	Cytochromes

Predicted Domain #2

Region A:
Residues: [109-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVKGPIIGGP FTLVSTENKI VTENDFCGKW VLLYFGYSFS PDVGPEQLKM MSKAVDKLES  60
   61 KHNEKILPVF VTLDPQRDTP SHLHAYLKEF DSRILGLTGT ASAMRQMAQE YRVYFKKVQE 120
  121 DGEDYLVDTS HNMYLINPKM EIVRCFGVEY NPDELSQELL KEVASVSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1wp0A
Description:	Human SCO1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits