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View Structure Prediction Details

Protein: BH137_ARATH
Organism: Arabidopsis thaliana
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BH137_ARATH.

Description E-value Query
Range
Subject
Range
gi|50979188, gi|... - gi|50979188|ref|NP_001003337.1| microphthalmia-associated transcription factor [Canis lupus familiar...
134.0 [0..1] [286..49]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT  60
   61 ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG RKARNSNNSK EGVEGRKSKK 120
  121 QKRGSKEEPP TD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 2pk2A
Description: No description for 2pk2A was found.

Predicted Domain #2
Region A:
Residues: [133-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIHVRARRGQ ATDSHSLAER VRREKISERM RTLQNLVPGC DKVTGKALML DEIINYVQTL  60
   61 QTQVEFLSMK LTSISPVVYD FGSDLDGLIL QSEMGSPEVG TSFTNAMPTT TPIFPSLLDN 120
  121 SVVPTHAQVQ EEGEERENFV DRSGFNNNNF CSFP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 1nkpA
Description: Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.12507195426228 bayes_pls_golite062009
nucleic acid binding 0.43204604575196 bayes_pls_golite062009
DNA binding 0.40884226851256 bayes_pls_golite062009
transcription regulator activity 0.31759335140578 bayes_pls_golite062009
transcription factor activity 0.09721565916723 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle