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View Structure Prediction Details

Protein: Y1814_ARATH
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1814_ARATH.

Description E-value Query
Range
Subject
Range
gi|25406543, gi|... - pir||F96810 hypothetical protein T11I11.8 [imported] - Arabidopsis thaliana, gi|12324257|gb|AAG5210...
241.0 [0..1] [355..1]

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Predicted Domain #1
Region A:
Residues: [1-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTVVSGRF STALLPTCFS LSRLHSVKYA AQRRVVFVSR SAHASSASVS VETNSNSNVD  60
   61 FVIEKKDKNR GEKKILACPI CYNSLAWISQ PNGLIESAAS GIQVQCNTCK RSYSGNETHL 120
  121 DLAVASGSKR YSEPMPLSTE LFRTPLVSFL YERGWRQNFI WGGFPGPEKE FEMAKAYLKP 180
  181 VLGGNIIDAS CGSGMFSRLF TRSDLFSLVI ALDYSENMLR QCYELLNKEE NFPNKEKLVL 240
  241 VRADIARLPF LSGSVDAVHA GAALHCWPSP SSAVAEISRV LRPGGVFVAT TFIYDGPFSF 300
  301 IPFLKNLRQE IMRYSGSHIF LNERELEDIC KACGLVNFTR VRNGPFIMLS ATKPS

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Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 1qzzA
Description: Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle