YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MTND3_ARATH
Organism: Arabidopsis thaliana
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTND3_ARATH.

Description E-value Query
Range
Subject
Range
gi|145333080, gi... - gi|79325111|ref|NP_001031640.1| metal ion binding [Arabidopsis thaliana], gi|145333080|ref|NP_001078...
320.0 [0..1] [199..1]

Back

Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEVVKDGRE EVIQAWYMDD SEEDQRLPHH KDPKEFLSLD KLAELGVLSW RLDADNYETD  60
   61 EDLKKIRESR GYSYMDFCEV CPEKLPNYEV KVKSFFEEHL HTDEEIRYCV AGSGYFDVRD 120
  121 RNEAWIRVWV KKGGMIVLPA GIYHRFTVDS DNYIKAMRLF VGEPVWTPYN RPHDHLPARK 180
  181 EYIDNFVKVN EGGVIDASA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.0
Match: 1vr3A
Description: Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.10919583483877 bayes_pls_golite062009
catalytic activity 0.401988496917198 bayes_pls_golite062009
nucleic acid binding 0.264825441145192 bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 0.262317442423345 bayes_pls_golite062009
transcription regulator activity 0.171717367198296 bayes_pls_golite062009
protein binding 0.133891883527478 bayes_pls_golite062009
DNA binding 0.0452305541151481 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle