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View Structure Prediction Details

Protein: gi|88011169, gi|...
Organism: Arabidopsis thaliana
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88011169, gi|....

Description E-value Query
Range
Subject
Range
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1
158.0 [0..2] [112..13]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKEIFKLA KGFRGRAKNC IRIARERVEK ALQYSYRDRR NKKREMRGLW IERINAGSRQ  60
   61 HGVNYGNFIH GLMKENIQLN RKVLSELSMH EPYSFKALVD VSRKSFPGNK NVVQASRKVD 120
  121 ISSINA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 2gyaO
Description: No description for 2gyaO was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.97474791978241 bayes_pls_golite062009
structural molecule activity 9.40020164128852 bayes_pls_golite062009
binding 1.3135072239079 bayes_pls_golite062009
nucleic acid binding 0.517171097292651 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle