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View Structure Prediction Details

Protein: CYP23_ARATH
Organism: Arabidopsis thaliana
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYP23_ARATH.

Description E-value Query
Range
Subject
Range
gi|50301248 - gi|50301248|gb|AAT73777.1| TRIM5/cyclophilin A fusion protein [Aotus trivirgatus]
242.0 [0..19] [192..301]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITRNLILG LACLAFVSIA KALPHEPELG SARVVFQTSY GDIEFGFYPT VAPKTVDHIF  60
   61 KLVRLGGYNT NHFFRVDKGF VAQVADVASG RSAPMNEEQR KEAEKKIVGE FSDVKHVRGT 120
  121 LSMGRYDDPN SAQSSFSMLL GNAPHLDRQY AVFGKVTKGD ETLSKLEEVP TRREGIFVMP 180
  181 TERITILSTY YYDTKMESCE EERSVLKRRL QASFVEVERQ RMKCFP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.39794
Match: 1ak4A
Description: Cyclophilin (eukaryotic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidyl-prolyl cis-trans isomerase activity 3.73853378771688 bayes_pls_golite062009
cis-trans isomerase activity 3.66963215732405 bayes_pls_golite062009
isomerase activity 1.96529188741504 bayes_pls_golite062009
unfolded protein binding 1.38124355054041 bayes_pls_golite062009
binding 1.0658238478447 bayes_pls_golite062009
catalytic activity 0.748655649755714 bayes_pls_golite062009
nucleic acid binding 0.426463143591006 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle