YRC Public Data Repository - Protein Structure Prediction

Protein:	MCD1_ARATH
Organism:	Arabidopsis thaliana
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MCD1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25373024, gi\|... - gi\|8886939\|gb\|AAF80625.1\|AC069251_18 F2D10.35 [Arabidopsis thaliana], pir\|\|G86340 protein F2D10.35 [...	674.0	[0..1]	[349..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDSLQFH SLCNLQSSIG RAKLQNPSSL VIFRRRPVNL NWVQFETKGS FVCKAIGDSS  60
   61 TPDEDIQNTQ SDDNVVVVTA TTQSDIPHDS EYSISRFRSM VTTLPPVVFL MKKCSVNSIW 120
  121 IGVCITATVL VAAIRAYVVR KSRDNQRAGS VADLVRRGQL RSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [164-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRRGISKSLN YEDPFNNPFV KLDKGSSTVE MCGKVYRLAP VTLTEKEQTI HQKRRSRAYQ  60
   61 WKRPTIFLKE GDSIPPDVDP DTVRWIPANH PFATTVSDID QDLAQNNVYQ KQGVPFRIRA 120
  121 EHEAMQKKLE ALQNEEKLNN LSIDSQNARD FQRPYKFSAK LEGENIQKNS QENHTGNSSS 180
  181 EETHKS