YRC Public Data Repository - Protein Structure Prediction

Protein:	RBL15_ARATH
Organism:	Arabidopsis thaliana
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL15_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21593075 - gi\|21593075\|gb\|AAM65024.1\| unknown [Arabidopsis thaliana]	242.0	[0..1]	[403..1]
gi\|218193411 - gi\|218193411\|gb\|EEC75838.1\| hypothetical protein OsI_12827 [Oryza sativa Indica Group] gi\|41469223, gi\|... - gi\|50917257\|ref\|XP_469025.1\| putative Rhomboid family protein (with alternative splicing) [Oryza sat...	208.0	[0..1]	[403..1]
gi\|110799144, gi... - gi\|110799144\|ref\|YP_696141.1\| rhomboid family protein [Clostridium perfringens ATCC 13124], gi\|11067... gi\|170662212, gi... - gi\|170662212\|gb\|EDT14895.1\| rhomboid family protein [Clostridium perfringens E str. JGS1987], gi\|168... gi\|169347261, gi... - gi\|169347261\|ref\|ZP_02866200.1\| rhomboid family protein [Clostridium perfringens C str. JGS1495], gi...	142.0	[0..25]	[218..148]
gi\|110683899, gi... - gi\|110803398\|ref\|YP_698757.1\| rhomboid family protein [Clostridium perfringens SM101], gi\|110683899\|...	140.0	[0..25]	[218..148]
gi\|18145114, gi\|... - gi\|18310434\|ref\|NP_562368.1\| rhomboid family protein [Clostridium perfringens str. 13], gi\|18145114\|...	137.0	[0..18]	[218..139]
gi\|27468153, gi\|... - gi\|27468153\|ref\|NP_764790.1\| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228], gi... gi\|251810965, gi... - gi\|251810965\|ref\|ZP_04825438.1\| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060], gi\|25... gi\|57867074, gi\|... - gi\|57867074\|ref\|YP_188690.1\| rhomboid family protein [Staphylococcus epidermidis RP62A], gi\|57637732...	137.0	[0..21]	[261..155]
gi\|17431999 - gi\|17431999\|emb\|CAD18676.1\| probable membrane transmembrane protein [Ralstonia solanacearum GMI1000] gi\|17549744 - gi\|17549744\|ref\|NP_523084.1\| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]	137.0	[0..23]	[390..205]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPNIVTEAG VQTRVGQWWN AIPFLTSSVV VVCGVIYLIC LLTGYDTFYE VCFLPSAIIS  60
   61 RFQVYRFYTA IIFHGSLLHV LFNMMALVPM GSELERIMGS VRLLYLTVLL ATTNAVLHLL 120
  121 IASLAGYNPF YQYDHLMNEC AIGFSGILFS MIVIETSLSG VTSRSVFGLF NVPAKLYPWI 180
  181 LLIVFQLLMT NVSLLGHLCG ILSGFSYSYG LFNFLMPGSS FFTTIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted Domain #2

Region A:
Residues: [227-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASWMSSFIR RPKFIMCTGG NPSSYIPTYS AQNTTSSGFS TGNAWRSLSS WLPQREASNQ  60
   61 SSEDSRFPGR GRTLSTARDP TAPAGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPNLHARLL EDSSSPDRLS DATVNTVADS RQAPIANAAV LPQSQGRVAA SEEQIQKLVA  60
   61 MGFDRTQVEV ALAAADDDLT VAVEILMSQQ A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1vg5A
Description:	Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits