YRC Public Data Repository - Protein Structure Prediction

Protein:	RBL15_ARATH
Organism:	Arabidopsis thaliana
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL15_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21593075 - gi\|21593075\|gb\|AAM65024.1\| unknown [Arabidopsis thaliana]	242.0	[0..1]	[403..1]
gi\|218193411 - gi\|218193411\|gb\|EEC75838.1\| hypothetical protein OsI_12827 [Oryza sativa Indica Group] gi\|41469223, gi\|... - gi\|50917257\|ref\|XP_469025.1\| putative Rhomboid family protein (with alternative splicing) [Oryza sat...	208.0	[0..1]	[403..1]
gi\|110799144, gi... - gi\|110799144\|ref\|YP_696141.1\| rhomboid family protein [Clostridium perfringens ATCC 13124], gi\|11067... gi\|170662212, gi... - gi\|170662212\|gb\|EDT14895.1\| rhomboid family protein [Clostridium perfringens E str. JGS1987], gi\|168... gi\|169347261, gi... - gi\|169347261\|ref\|ZP_02866200.1\| rhomboid family protein [Clostridium perfringens C str. JGS1495], gi...	142.0	[0..25]	[218..148]
gi\|110683899, gi... - gi\|110803398\|ref\|YP_698757.1\| rhomboid family protein [Clostridium perfringens SM101], gi\|110683899\|...	140.0	[0..25]	[218..148]
gi\|18145114, gi\|... - gi\|18310434\|ref\|NP_562368.1\| rhomboid family protein [Clostridium perfringens str. 13], gi\|18145114\|...	137.0	[0..18]	[218..139]
gi\|27468153, gi\|... - gi\|27468153\|ref\|NP_764790.1\| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228], gi... gi\|251810965, gi... - gi\|251810965\|ref\|ZP_04825438.1\| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060], gi\|25... gi\|57867074, gi\|... - gi\|57867074\|ref\|YP_188690.1\| rhomboid family protein [Staphylococcus epidermidis RP62A], gi\|57637732...	137.0	[0..21]	[261..155]
gi\|17431999 - gi\|17431999\|emb\|CAD18676.1\| probable membrane transmembrane protein [Ralstonia solanacearum GMI1000] gi\|17549744 - gi\|17549744\|ref\|NP_523084.1\| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]	137.0	[0..23]	[390..205]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPNIVTEAG VQTRVGQWWN AIPFLTSSVV VVCGVIYLIC LLTGYDTFYE VCFLPSAIIS  60
   61 RFQVYRFYTA IIFHGSLLHV LFNMMALVPM GSELERIMGS VRLLYLTVLL ATTNAVLHLL 120
  121 IASLAGYNPF YQYDHLMNEC AIGFSGILFS MIVIETSLSG VTSRSVFGLF NVPAKLYPWI 180
  181 LLIVFQLLMT NVSLLGHLCG ILSGFSYSYG LFNFLMPGSS FFTTIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted Domain #2

Region A:
Residues: [227-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASWMSSFIR RPKFIMCTGG NPSSYIPTYS AQNTTSSGFS TGNAWRSLSS WLPQREASNQ  60
   61 SSEDSRFPGR GRTLSTARDP TAPAGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.469	c.55.4	Translational machinery components
View	Download	0.449	c.55.4	Translational machinery components
View	Download	0.424	a.204.1	Description not found.
View	Download	0.333	a.12.1	Kix domain of CBP (creb binding protein)
View	Download	0.296	c.55.4	Translational machinery components
View	Download	0.293	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.270	d.58.39	Glutamyl tRNA-reductase catalytic, N-terminal domain
View	Download	0.226	a.64.1	Saposin

Predicted Domain #3

Region A:
Residues: [313-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPNLHARLL EDSSSPDRLS DATVNTVADS RQAPIANAAV LPQSQGRVAA SEEQIQKLVA  60
   61 MGFDRTQVEV ALAAADDDLT VAVEILMSQQ A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1vg5A
Description:	Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits