YRC Public Data Repository - Protein Structure Prediction

Protein:	SC24A_ARATH
Organism:	Arabidopsis thaliana
Length:	1038 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC24A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|74204998 - gi\|74204998\|dbj\|BAE20977.1\| unnamed protein product [Mus musculus]	895.0	[0..229]	[1037..1]
gi\|114631271 - gi\|114631271\|ref\|XP_001144755.1\| PREDICTED: SEC24-related protein C isoform 6 [Pan troglodytes]	886.0	[0..92]	[1037..8]
gi\|109502099, gi... - gi\|109502099\|ref\|XP_001056270.1\| PREDICTED: similar to SEC24 related gene family, member C isoform 1...	881.0	[0..158]	[1037..2]
gi\|76656555 - gi\|76656555\|ref\|XP_586458.2\| PREDICTED: similar to SEC24-related protein C isoform 1 [Bos taurus]	869.0	[0..2]	[1037..42]
SEC24C - SEC24 family, member C (S. cerevisiae)	868.0	[0..2]	[1037..42]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTENQGYPN FPARPASSPF ASAPPPGIPP QSGGPPTGSE AVGFRPFTPS ASQPTRPFTA  60
   61 SGPPPAPPVG TMRPGQPSPF VSQIPGSRPP PPSSNSFPSP AYGPPGGAPF QRFPSPPFPT 120
  121 TQNPPQGPPP PQTLAGHLSP PMSLRPQQPM APVAMGPPPQ STTSGLPGAN AYPPATDYHM 180
  181 PARPGFQQSM PPVTPSYPGV GGSQPSFPGY PSKQVLQAPT PFQTSQGPPG PPPVSSYPPH 240
  241 TGGFAQRPNM AAQQNLHPNY APPPSNVQGL TEDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [275-1038]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSLSLSSIPG SLEPGLDHKS FPRPLDGDVE PNSFAEMYPM NCHSRYLRLT TSAIPNSQSL  60
   61 ASRWHLPLGA VVCPLAETPE GEEVPLIDFG STGIIRCRRC RTYVNPFVTF TDSGRKWRCN 120
  121 ICSMLNDVPG EYFSHLDATG RRMDMDQRPE LTKGSVEIIA PTEYMVRPPM PPIYFFLIDV 180
  181 SISATKSGML EVVAQTIKSC LDNLPGYPRT QIGFITYDST LHFYNMKSSL SQPQMMVVSD 240
  241 LDDIFVPLPD DLLVNLSESR TVVDAFLDSL PLMFQDNFNV ESAFGPALRA AFMVMNQLGG 300
  301 KLLIFQNSLP SLGAGRLKLR GDDPRVYGTD KEYALRVAED PFYKQMAADC TKFQIGINVY 360
  361 AFSDKYTDIA SLGTLAKYTG GQVYYYPGFQ SSVHGDKLRH ELARDLTRET AWEAVMRIRC 420
  421 GKGIRFSSYH GNFMLRSTDL LALPAVDCDK AYAMQLSLEE TLLTSQTVYF QVALLYTASC 480
  481 GERRIRVHTS VAPVVTDLGE MYRQADTGSI VSLYARLAIE KSLSAKLDDA RNAIQQKIVK 540
  541 ALKEYRNLHA VQHRLGSRLV YPESLKFLPL YGLAITKSTP LLGGPADTSL DERCAAGFTM 600
  601 MALPVKKLLK LLYPNLFRVD EWLLKPSAAH DDFKDVLRRL PLAAESLDSR GLYIYDDGFR 660
  661 LVLWFGRMLS PDIAKNLLGV DFAADLSRVT FQEQENGMSK KLMRLVKKLR ESDPSYHPMC 720
  721 FLVRQGEQPR EGFLLLRNLI EDQMGGSSGY VDWILQLHRQ VQQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	3eh1A
Description:	No description for 3eh1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits