YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30681429, gi\|...
Organism:	Arabidopsis thaliana
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681429, gi|....

Description	E-value	Query Range	Subject Range
gi\|9758421 - gi\|9758421\|dbj\|BAB08963.1\| unnamed protein product [Arabidopsis thaliana]	195.0	[0..7]	[252..1]
gi\|49257594, gi\|... - gi\|49257594\|gb\|AAH74193.1\| MGC82090 protein [Xenopus laevis], gi\|148232730\|ref\|NP_001086103.1\| MGC82...	156.0	[0..40]	[252..2]
gi\|74203501, gi\|... - gi\|74203501\|dbj\|BAE20904.1\| unnamed protein product [Mus musculus], gi\|225703114\|ref\|NP_705799.2\| J-...	151.0	[0..22]	[249..4]
gi\|157106236, gi... - gi\|157106236\|ref\|XP_001649232.1\| hypothetical protein AaeL_AAEL004465 [Aedes aegypti], gi\|157106234\|...	149.0	[0..51]	[252..19]
gi\|114685651 - gi\|114685651\|ref\|XP_515052.2\| PREDICTED: hypothetical protein [Pan troglodytes]	148.0	[0..48]	[251..22]
gi\|58390959, gi\|... - gi\|58390959\|ref\|XP_318106.2\| AGAP004722-PA [Anopheles gambiae str. PEST], gi\|55236897\|gb\|EAA13259.2\|... AGAP004722-PA - \|protein_coding\|2L:2752440:2753193:-1\|gene:AGAP004722	148.0	[0..58]	[252..22]
gi\|83638757 - gi\|83638757\|gb\|AAI09580.1\| DNAJB12 protein [Bos taurus]	147.0	[0..14]	[218..33]
gi\|73995390 - gi\|73995390\|ref\|XP_534725.2\| PREDICTED: similar to J-type co-chaperone HSC20 [Canis familiaris]	147.0	[0..49]	[251..23]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC  60
   61 SESGAGCWNC GEKAAFLFCN SCRSIQPVDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVDYFQIFGL EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR  60
   61 TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS LNQIRSQVQE 120
  121 KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1fpoA
Description:	HSC20 (HSCB), N-terminal (J) domain; HSC20 (HSCB), C-terminal oligomerisation domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits