YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30681429, gi\|...
Organism:	Arabidopsis thaliana
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681429, gi|....

Description	E-value	Query Range	Subject Range
gi\|9758421 - gi\|9758421\|dbj\|BAB08963.1\| unnamed protein product [Arabidopsis thaliana]	195.0	[0..7]	[252..1]
gi\|49257594, gi\|... - gi\|49257594\|gb\|AAH74193.1\| MGC82090 protein [Xenopus laevis], gi\|148232730\|ref\|NP_001086103.1\| MGC82...	156.0	[0..40]	[252..2]
gi\|74203501, gi\|... - gi\|74203501\|dbj\|BAE20904.1\| unnamed protein product [Mus musculus], gi\|225703114\|ref\|NP_705799.2\| J-...	151.0	[0..22]	[249..4]
gi\|157106236, gi... - gi\|157106236\|ref\|XP_001649232.1\| hypothetical protein AaeL_AAEL004465 [Aedes aegypti], gi\|157106234\|...	149.0	[0..51]	[252..19]
gi\|114685651 - gi\|114685651\|ref\|XP_515052.2\| PREDICTED: hypothetical protein [Pan troglodytes]	148.0	[0..48]	[251..22]
gi\|58390959, gi\|... - gi\|58390959\|ref\|XP_318106.2\| AGAP004722-PA [Anopheles gambiae str. PEST], gi\|55236897\|gb\|EAA13259.2\|... AGAP004722-PA - \|protein_coding\|2L:2752440:2753193:-1\|gene:AGAP004722	148.0	[0..58]	[252..22]
gi\|83638757 - gi\|83638757\|gb\|AAI09580.1\| DNAJB12 protein [Bos taurus]	147.0	[0..14]	[218..33]
gi\|73995390 - gi\|73995390\|ref\|XP_534725.2\| PREDICTED: similar to J-type co-chaperone HSC20 [Canis familiaris]	147.0	[0..49]	[251..23]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC  60
   61 SESGAGCWNC GEKAAFLFCN SCRSIQPVDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.549	a.29.8	Description not found.
View	Download	0.462	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.460	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.460	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.454	a.59.1	PAH2 domain
View	Download	0.451	a.59.1	PAH2 domain
View	Download	0.409	a.29.16	Description not found.
View	Download	0.370	a.3.1	Cytochrome c
View	Download	0.361	d.15.4	2Fe-2S ferredoxin-like
View	Download	0.312	a.3.1	Cytochrome c
View	Download	0.214	a.59.1	PAH2 domain

Predicted Domain #2

Region A:
Residues: [91-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVDYFQIFGL EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR  60
   61 TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS LNQIRSQVQE 120
  121 KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1fpoA
Description:	HSC20 (HSCB), N-terminal (J) domain; HSC20 (HSCB), C-terminal oligomerisation domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits