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View Structure Prediction Details

Protein: gi|22330184, gi|...
Organism: Arabidopsis thaliana
Length: 890 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|22330184, gi|....

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSMPYLHK NLRLLRLLSS KSSPFPLSLR PFSPRSFSLS TLFSSSSSSS SMENNEATNG  60
   61 SKSSSNSFVF NKRRAEGFDI TDKKKRNLER KSQKLNPTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIAYAQILGT GMDTQDTSSS VLLFFDKQRF IFNAGEGLQR FCTEHKIKLS KIDHVFLSRV  60
   61 CSETAGGLPG LLLTLAGIGE EGLSVNVWGP SDLNYLVDAM KSFIPRAAMV HTRSFGPSST 120
  121 PDPIVLVNDE VVKISAIILK PCHSEEDSGN KSGDLSVVYV CELPEILGKF DLEKAKKVFG 180
  181 VKPGPKYSRL QSGESVKSDE RDITVHPSDV MGPSLPGPIV LLVDCPTESH AAELFSLKSL 240
  241 ESYYSSPDEQ TIGAKFVNCI IHLSPSSVTS SPTYQSWMKK FHLTQHILAG HQRKNMAFPI 300
  301 LKASSRIAAR LNYLCPQFFP APGFWPSQLT DNSIIDPTPS NKCSSSNLAE SISAENLLKF 360
  361 NLRPVAIRGI DRSCIPAPLT SSEVVDELLS EIPEIKDKSE EIKQFWNKQH NKTIIEKLWL 420
  421 SECNTVLPNC LEKIRRDDME IVILGTGSSQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.30103
Match: 2i7tA
Description: No description for 2i7tA was found.

Predicted Domain #3
Region A:
Residues: [550-890]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKYRNVSAI FIDLFSRGSL LLDCGEGTLG QLKRRYGLDG ADEAVRKLRC IWISHIHADH  60
   61 HTGLARILAL RSKLLKGVTH EPVIVVGPRP LKRFLDAYQR LEDLDMEFLD CRSTTATSWA 120
  121 SLESGGEAEG SLFTQGSPMQ SVFKRSDISM DNSSVLLCLK NLKKVLSEIG LNDLISFPVV 180
  181 HCPQAYGVVI KAAERVNSVG EQILGWKMVY SGDSRPCPET VEASRDATIL IHEATFEDAL 240
  241 IEEALAKNHS TTKEAIDVGS AANVYRIVLT HFSQRYPKIP VIDESHMHNT CIAFDLMSIN 300
  301 MADLHVLPKV LPYFKTLFRD EMVEDEDADD VAMDDLKEEA L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1y44A
Description: Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle