YRC Public Data Repository - Protein Structure Prediction

Protein:	TO401_ARATH
Organism:	Arabidopsis thaliana
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TO401_ARATH.

Description	E-value	Query Range	Subject Range
gi\|92880528 - gi\|92880528\|gb\|ABE85742.1\| Porin, eukaryotic type [Medicago truncatula]	295.0	[0..1]	[309..1]
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	288.0	[0..28]	[308..288]
TOM40_XENLA - Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus laevis GN=tomm40 PE=2 SV=1	285.0	[0..5]	[309..32]
VDAC2 - voltage-dependent anion channel 2	283.0	[0..24]	[303..23]
gi\|115452749, gi... - gi\|215740544\|dbj\|BAG97200.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125586094\|gb\|...	282.0	[0..1]	[309..29]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	281.0	[0..27]	[308..12]
TOM40_XENTR - Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus tropicalis GN=tomm40 PE=2 SV=1	281.0	[0..5]	[309..32]
gi\|73953097, gi\|... - gi\|73953097\|ref\|XP_536398.2\| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1 [Cani...	280.0	[0..27]	[308..11]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA  60
   61 LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY YDPKLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.483	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.445	d.352.1	Description not found.
View	Download	0.419	d.109.1	Actin depolymerizing proteins
View	Download	0.419	d.109.1	Actin depolymerizing proteins
View	Download	0.400	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.400	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.397	d.58.5	GlnB-like
View	Download	0.387	d.109.1	Actin depolymerizing proteins

Predicted Domain #2

Region A:
Residues: [107-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIGRVMTDGR LNARLKADLT DKLVVKANAL ITNEEHMSQA MFNFDYMGSD YRAQLQLGQS  60
   61 ALIGATYIQS VTNHLSLGGE IFWAGVPRKS GIGYAARYET DKMVASGQVA STGAVVMNYV 120
  121 QKISDKVSLA TDFMYNYFSR DVTASVGYDY MLRQARVRGK IDSNGVASAL LEERLSMGLN 180
  181 FLLSAELDHK KKDYKFGFGL TVG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1t16A
Description:	Crystal structure of the bacterial fatty acid transporter FadL from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits