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View Structure Prediction Details

Protein: SHL_ARATH
Organism: Arabidopsis thaliana
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHL_ARATH.

Description E-value Query
Range
Subject
Range
gi|21595796 - gi|21595796|gb|AAM66132.1| ES43 like protein [Arabidopsis thaliana]
185.0 [0..1] [228..1]
gi|218199211 - gi|218199211|gb|EEC81638.1| hypothetical protein OsI_25173 [Oryza sativa Indica Group]
gi|50934783, gi|... - gi|50934783|ref|XP_476919.1| putative ES43 protein [Oryza sativa (japonica cultivar-group)], gi|5050...
156.0 [0..1] [224..1]
gi|78191416 - gi|78191416|gb|ABB29929.1| unknown [Solanum tuberosum]
149.0 [0..1] [196..1]
gi|1345528, gi|6... - pir||S44281 ES43 protein - barley, gi|1345528|emb|CAA54682.1| ES43 [Hordeum vulgare]
147.0 [0..5] [224..10]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR  60
   61 VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK CKVHSFSSYT KLDSVGNDDF 120
  121 FCRFEYNSTT GAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1w4sA
Description: Crystal structure of the proximal BAH domain of polybromo
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [134-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPDRVTVFCK CEMPYNPDDL MVQCEECSEW FHPSCIGTTI EEAKKPDNFY CEECSPQQQN  60
   61 LHNSNSTSNN RDAKVNGKRS LEVTKSKNKH TKRPG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.39794
Match: 2f6jA
Description: No description for 2f6jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle